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Protein Overview: gi|18408151, gi|...

General Information:
Name(s) found: gi|48958531 [NCBI NR]
gi|18408151 [NCBI NR]
Description(s) found:
Found 9 descriptions.
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  • gi|48958531|gb|AAT47818.1| At1g64880 [Arabidopsis thaliana] [NCBI NR]
  • gi|18408151|ref|NP_564842.1| ribosomal protein S5 family protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 515 amino acids

    Gene Ontology:
    Cellular Component: Golgi apparatus [IDA]
    ribosome [ISS]
    intracellular [ISS]
    Biological Process: translation [IEA][ISS]
    Molecular Function: RNA binding [IEA]
    structural constituent of ribosome [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLRTRASSW PRLLLRRNPR SSFSRQISTL DSSTSTFPRR ISGYYSSSFF PVNQTPWISS  60
   61 QRYRFFSSST MSPSEADRVV RELIAEVEKE KQREREERQR QGLDYKDIDA EDEEDYLGIE 120
  121 PFIEKLKKQN LKDDGELNRR EESSDSDSEY DEIDLDEERK KEDIFNKKFQ RHKELLQTLT 180
  181 KSETLDEAFR WMNKLDKFEE KHFKLRPEYR VIGELMNRLK VAEGKEKFVL QQKLNRAMRL 240
  241 VEWKEAFDPN NPANYGVIER DNVQGGGEER EERLVADGPK DDNDDDDDEE EFDDMKERDD 300
  301 ILLEKLNAID KKLEIKLSEL DHTFGKKGKR LEEEIRELAE DRNALTEKKR QPLYRKGYDV 360
  361 HVIDVKKVCK VTKGGRVERY TALMVCGNYE GIIGYAKAKA ETGQSAMQKA YEKCFQNLHY 420
  421 VERHEEHTIA HAIQTSYKKT KLYLWPAPTT TGMKAGRVVK TILLLAGFKN IKSKVIGSRN 480
  481 SYNTVKAVLK ALNAVETPKD VQEKFGRTVV EKYLL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..344] PSI-BLAST 17.09691 Heavy meromyosin subfragment
    2 View Details [345..515] PSI-BLAST 57.221849 No description for 1vs5E was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • structural constituent of ribosome
    		•  6.7575603459566 bayes_pls_golite062009
  • structural molecule activity
    		•  6.24187874355454 bayes_pls_golite062009
  • RNA binding
    		•  3.5405508156591 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.98844454241303 bayes_pls_golite062009
  • binding
    		•  2.86619976447436 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
    		•  1.56111033008721 bayes_pls_golite062009
  • DNA binding
    		•  1.49492945560218 bayes_pls_golite062009
  • protein binding
    		•  1.43319050998069 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  1.35935222635763 bayes_pls_golite062009
  • exoribonuclease activity
    		•  1.31205157616894 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.22178500811874 bayes_pls_golite062009
  • 3'-5' exonuclease activity
    		•  1.10842504252923 bayes_pls_golite062009
  • double-stranded RNA binding
    		•  0.967560318725736 bayes_pls_golite062009
  • mRNA binding
    		•  0.625703291171316 bayes_pls_golite062009
  • transcription factor activity
    		•  0.31021399747574 bayes_pls_golite062009
  • RNA helicase activity
    		•  0.222896865667011 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.84

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle