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Protein Overview: gi|42567493, gi|...

General Information:
Name(s) found: gi|42567493 [NCBI NR]
gi|28393444 [NCBI NR]
gi|110736900 [NCBI NR]
Description(s) found:
Found 12 descriptions.
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  • gi|42567493|ref|NP_195508.2| lyase [Arabidopsis thaliana] [NCBI NR]
  • gi|28393444|gb|AAO42144.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|110736900|dbj|BAF00407.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 678 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: biological_process [ND]
    Molecular Function: lyase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEYGAPGMKA GRRVLTPLFV LVFLLQGVHS QTSRNKFNIA KAGHKLASPP VTLKKVGDNQ  60
   61 VVVDNGIIDV TFSSPQGLIT RIKYNGLNNV LNDQIENRGY WDVVWYKPGQ VSSTDYLVGT 120
  121 KFDIVNQTSE QIEISFSRTF SQRGSGIPLN VDKRYIIRRG VSGIYMYAVL ERLIGWPDVD 180
  181 MDQIRIVFKL NTTKFDFMAV SDNRQKIMPF DTDRDITKGR ASPLAYKEAV HLINPQNHML 240
  241 KGQVDDKYMY SVENKDNKVH GWISSDQRIG FWMITPSDEF HACGPIKQDL TSHVGPTTLS 300
  301 MFTSVHYAGK DMNTNYKSKE PWKKVFGPVF VYLNSASSRN LLWTDAKRQM VSEVQSWPYD 360
  361 FVKSVDYPLH HQRGTVKGQL FVIDRYIKNV TYLFGQFAFV GLALPGEAGS WQTENKGYQF 420
  421 WTRADKMGMF TIANVRPGTY SLYAWVSGFI GDYKYVRDIT ITPGREIDVG HIVYVPPRNG 480
  481 PTLWEIGQPD RTAAEFYIPD PDPTLFTKLY LNYSNPQDRF RQYGLWDRYS VLYPRNDLVF 540
  541 TAGVSDYKKD WFYAHVNRKA GNGTYKATTW QIKFNLKAVI QTRIYTLRIA LAAASTIDLL 600
  601 VWVNEVDSKP LFITGLIGRD NAIARHGIHG LYKLYNIDVH GKLLRVGNNT IFLTHGRNSD 660
  661 SFSGVMYDYL RLEGPSGV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..678] PSI-BLAST 135.0 Rhamnogalacturonan lyase from Aspergillus aculeatus

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.24087518312023 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle