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View Structure Prediction Details

Protein: gi|42567493, gi|...
Organism: Arabidopsis thaliana
Length: 678 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42567493, gi|....

Description E-value Query
Range
Subject
Range
gi|25354448, gi|... - gi|4314359|gb|AAD15570.1| unknown protein [Arabidopsis thaliana], pir||G84614 hypothetical protein A...
853.0 [0..1] [675..1]

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Predicted Domain #1
Region A:
Residues: [1-678]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEYGAPGMKA GRRVLTPLFV LVFLLQGVHS QTSRNKFNIA KAGHKLASPP VTLKKVGDNQ  60
   61 VVVDNGIIDV TFSSPQGLIT RIKYNGLNNV LNDQIENRGY WDVVWYKPGQ VSSTDYLVGT 120
  121 KFDIVNQTSE QIEISFSRTF SQRGSGIPLN VDKRYIIRRG VSGIYMYAVL ERLIGWPDVD 180
  181 MDQIRIVFKL NTTKFDFMAV SDNRQKIMPF DTDRDITKGR ASPLAYKEAV HLINPQNHML 240
  241 KGQVDDKYMY SVENKDNKVH GWISSDQRIG FWMITPSDEF HACGPIKQDL TSHVGPTTLS 300
  301 MFTSVHYAGK DMNTNYKSKE PWKKVFGPVF VYLNSASSRN LLWTDAKRQM VSEVQSWPYD 360
  361 FVKSVDYPLH HQRGTVKGQL FVIDRYIKNV TYLFGQFAFV GLALPGEAGS WQTENKGYQF 420
  421 WTRADKMGMF TIANVRPGTY SLYAWVSGFI GDYKYVRDIT ITPGREIDVG HIVYVPPRNG 480
  481 PTLWEIGQPD RTAAEFYIPD PDPTLFTKLY LNYSNPQDRF RQYGLWDRYS VLYPRNDLVF 540
  541 TAGVSDYKKD WFYAHVNRKA GNGTYKATTW QIKFNLKAVI QTRIYTLRIA LAAASTIDLL 600
  601 VWVNEVDSKP LFITGLIGRD NAIARHGIHG LYKLYNIDVH GKLLRVGNNT IFLTHGRNSD 660
  661 SFSGVMYDYL RLEGPSGV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 135.0
Match: 1nkgA
Description: Rhamnogalacturonan lyase from Aspergillus aculeatus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.24087518312023 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle