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Protein Overview: gi|25354448, gi|...

General Information:
Name(s) found: gi|4314359 [NCBI NR]
gi|25354448 [NCBI NR]
gi|15227253 [NCBI NR]
Description(s) found:
Found 11 descriptions.
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  • gi|4314359|gb|AAD15570.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • pir||G84614 hypothetical protein At2g22620 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15227253|ref|NP_179847.1| lyase [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 677 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: carbohydrate metabolic process [IEA]
    Molecular Function: lyase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVGAPASKP GRIIVQVFLL QLLLLLQSVH SQRSQNKLNI TKPGQNIPAL TVQLRRVGHD  60
   61 TVVVDNGIVQ VTFSNPEGLI TGIKYHGIDN VLDDKIDDRG YWDVVWYEPE KKQKTDKLEG 120
  121 TKFEIITQNE EQIEISFTRT WTISRRGSLV PLNVDKRYII RSGVSGLYMY GILERLEGWP 180
  181 DVDMDQIRIV FKLNPKKFDF MAISDDRQRS MPSMADRENS KSLAYKEAVL LTNPSNPMFK 240
  241 GEVDDKYMYS MEDKDNNVHG WISSDPPVGF WMITPSDEFR LGGPIKQDLT SHAGPITLSM 300
  301 FTSTHYAGKE MRMDYRNGEP WKKVFGPVLA YLNSVSPKDS TLRLWRDAKR QMAAEVKSWP 360
  361 YDFITSEDYP LRHQRGTLEG QFLIKDSYVS RLKIYGKFAF VGLAPIGEAG SWQTESKGYQ 420
  421 FWTKADRRGR FIIENVRAGN YSLYAWGSGF IGDYKYEQNI TITPGSEMNV GPLVYEPPRN 480
  481 GPTLWEIGVP DRTAGEFYIP DPYPTLMNKL YVNPLQDRFR QYGLWDRYAD LYPQNDLVYT 540
  541 IGVSDYRSDW FFAHVARNVG NDTYQPTTWQ IIFNLKNVNR IGRYTLRIAL ASAADSELQI 600
  601 RINDPKSDAI FTTGFIGKDN AIARHGIHGL YRLYSIDVAG NLLSVGDNTI FLTQTRSRTP 660
  661 FQGIMYDYIR LESPFRT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..677] PSI-BLAST 120.0 Rhamnogalacturonan lyase from Aspergillus aculeatus

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.24087518312023 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
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