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Protein Overview: DNLI4_ARATH

General Information:
Name(s) found: DNLI4_ARATH [Swiss-Prot]
Description(s) found:
Found 12 descriptions.
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  • DNA ligase 4 OS=Arabidopsis thaliana GN=LIG4 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 1219 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEA]
    Biological Process: response to X-ray [IMP]
    [NOT]DNA integration [IMP]
    [NOT]telomere maintenance [IMP]
    response to DNA damage stimulus [IMP]
    double-strand break repair [IMP]
    Molecular Function: DNA ligase (ATP) activity [IDA]
    protein binding [IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEEIKFSVL VSLFNWIQKS KTSSQKRSKF RKFLDTYCKP SDYFVAVRLI IPSLDRERGS  60
   61 YGLKESVLAT CLIDALGISR DAPDAVRLLN WRKGGTAKAG ANAGNFSLIA AEVLQRRQGM 120
  121 ASGGLTIKEL NDLLDRLASS ENRAEKTLVL STLIQKTNAQ EMKWVIRIIL KDLKLGMSEK 180
  181 SIFQEFHPDA EDLFNVTCDL KLVCEKLRDR HQRHKRQDIE VGKAVRPQLA MRIGDVNAAW 240
  241 KKLHGKDVVA ECKFDGDRIQ IHKNGTDIHY FSRNFLDHSE YAHAMSDLIV QNILVDKCIL 300
  301 DGEMLVWDTS LNRFAEFGSN QEIAKAAREG LDSHKQLCYV AFDVLYVGDT SVIHQSLKER 360
  361 HELLKKVVKP LKGRLEVLVP EGGLNVHRPS GEPSWSIVVH AAADVERFFK ETVENRDEGI 420
  421 VLKDLESKWE PGDRSGKWMK LKPEYIRAGA DLDVLIIGGY YGSGRRGGEV AQFLVALADR 480
  481 AEANVYPRRF MSFCRVGTGL SDDELNTVVS KLKPYFRKNE HPKKAPPSFY QVTNHSKERP 540
  541 DVWIDSPEKS IILSITSDIR TIRSEVFVAP YSLRFPRIDK VRYDKPWHEC LDVQAFVELV 600
  601 NSSNGTTQKQ KESESTQDNP KVNKSSKRGE KKNVSLVPSQ FIQTDVSDIK GKTSIFSNMI 660
  661 FYFVNVPRSH SLETFHKMVV ENGGKFSMNL NNSVTHCIAA ESSGIKYQAA KRQRDVIHFS 720
  721 WVLDCCSRNK MLPLLPKYFL HLTDASRTKL QDDIDEFSDS YYWDLDLEGL KQVLSNAKQS 780
  781 EDSKSIDYYK KKLCPEKRWS CLLSCCVYFY PYSQTLSTEE EALLGIMAKR LMLEVLMAGG 840
  841 KVSNNLAHAS HLVVLAMAEE PLDFTLVSKS FSEMEKRLLL KKRLHVVSSH WLEESLQREE 900
  901 KLCEDVYTLR PKYMEESDTE ESDKSEHDTT EVASQGSAQT KEPASSKIAI TSSRGRSNTR 960
  961 AVKRGRSSTN SLQRVQRRRG KQPSKISGDE TEESDASEEK VSTRLSDIAE ETDSFGEAQR1020
 1021 NSSRGKCAKR GKSRVGQTQR VQRSRRGKKA AKIGGDESDE NDELDGNNNV SADAEEGNAA1080
 1081 GRSVENEETR EPDIAKYTES QQRDNTVAVE EALQDSRNAK TEMDMKEKLQ IHEDPLQAML1140
 1141 MKMFPIPSQK TTETSNRTTG EYRKANVSGE CESSEKRKLD AETDNTSVNA GAESDVVPPL1200
 1201 VKKKKVSYRD VAGELLKDW

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..613] PSI-BLAST 132.0 No description for 2hivA was found.
    2 View Details [614..753] Pfam 9.853872 No description for PF00533.18 was found. No confident structure predictions are available.
    3 View Details [754..971] deduced N/A No confident structure predictions are available.
    4 View Details [972..1219] MSA 3.296995 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle