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Protein Overview: AT18G_ARATH

General Information:
Name(s) found: AT18G_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|27311609|gb|AAO00770.1| Unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|240253994|ref|NP_171837.7| AtATG18g [Arabidopsis thaliana] [NCBI NR]
  • Autophagy-related protein 18g OS=Arabidopsis thaliana GN=ATG18G PE=2 SV=1 [Swiss-Prot]
  • Unknown protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • | Symbols: ATATG18G, ATG18G | homolog of yeast autophagy 18 (ATG18) G | chr1:836155-840362 FORWARD LENGTH=959 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 959 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: response to starvation [IEP]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKKGKGKNS GLLPNSFKII SSCLKTVSAN ATNVASSVRS AGASVAASIS AAEDDKDQVT  60
   61 WAGFGILELG QHVTRHVLLL GYQNGFQVFD VEDASNFNEL VSKRGGPVSF LQMQPLPARS 120
  121 GDHEGFWNSH PLLLVVAGDE TNGTGLGHSF SQNGSLARDG SSDSKAGDAI NYPTTVRFYS 180
  181 LRSHSYVYVL RFRSSVCMIR CSSRVVAVGL ANQIYCVDAL TLENKFSVLT YPVPQPVRQG 240
  241 TTRVNVGYGP MAVGPRWLAY ASKSSMTMKT GRLSPQTFTS SPSLSPSSSS GGSSFMARYA 300
  301 MESSKQLANG LINLGDMGYK TLSKYCQDML PDGSTSPASP NAIWKVGGVS GSDAENAGMV 360
  361 AVKDLVSGAL VSQFKAHTSP ISALCFDPSG TLLVTASVCG NNINVFQIMP SRSHNAPGDL 420
  421 SYEWESSHVH LFKLHRGITS AIVQDICFSQ QSQWVAIISS KGTCHIFVLN SSGSDAAFQP 480
  481 CEGEEPTRLP ASSLPWWFTQ SLSSNQQSLS PPTAVALSVV SRIKYSSFGW LNTVSNATTA 540
  541 ATGKVFVPSG AVAAVFHKSV THDLQLNSRT NALEHILVYT PSGHVVQHEL LPSVCTESPE 600
  601 NGLRVQKTSH VQVQEDDLRV KVEPIQWWDV CRRSDWLETE ERLPKSITEK QYDLETVSNH 660
  661 LTSHEDACLS LDMNSHFSED KYLKSCSEKP PERSHCYLSN FEVKVTSGML PVWQNSKISF 720
  721 HVMDSPRDSS STGGEFEIEK VPAHELEIKQ KKLLPVFDHF HSTKATLEDR FSMKCYHTSA 780
  781 TGSHQVNGKI CQDIINCHSK PGSIESAESS EEGSTKQMEN LHDSDHMSNS IKSSLPLYPT 840
  841 VNGIYKEIEK NNANGWMEKP VTAKLSTLKE TRITNGFTTP PILTDSVNEQ MLSTGKPPMG 900
  901 FGFALHEEHC KAVADPKEEH LKKKLDEVTN VHHLNVNNNN TEKLQGDKMV HGMVSFVGD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..70] PSI-BLAST 6.69897 Surface layer protein
    2 View Details [71..680] PSI-BLAST 34.0 Actin interacting protein 1
    3 View Details [681..743] PSI-BLAST 59.39794 Actin interacting protein 1
    4 View Details [744..959] PSI-BLAST 47.045757 Homology Model of Yeast RACK1 Protein fitted into 11.7A cryo-EM map of Yeast 80S Ribosome


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.52

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle