YRC Public Data Repository - Protein Structure Prediction

Protein:	AT18G_ARATH
Organism:	Arabidopsis thaliana
Length:	959 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AT18G_ARATH.

Description	E-value	Query Range	Subject Range
gi\|148658115, gi... - gi\|148658115\|ref\|YP_001278320.1\| NB-ARC domain-containing protein [Roseiflexus sp. RS-1], gi\|1485702...	759.0	[0..3]	[830..750]
gi\|118397021 - gi\|118397021\|ref\|XP_001030846.1\| hypothetical protein TTHERM_01006540 [Tetrahymena thermophila] gi\|118397021, gi... - gi\|89285162\|gb\|EAR83183.1\| hypothetical protein TTHERM_01006540 [Tetrahymena thermophila SB210], gi\|...	695.0	[0..5]	[879..1681]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	650.0	[0..211]	[927..831]
gi\|186686617, gi... - gi\|23124439\|ref\|ZP_00106428.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668661...	640.0	[0..22]	[681..620]
gi\|115443476, gi... - gi\|115443476\|ref\|XP_001218545.1\| hypothetical protein ATEG_09923 [Aspergillus terreus NIH2624], gi\|1...	624.0	[0..98]	[774..641]

Back

Predicted Domain #1

Region A:
Residues: [1-70]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKKGKGKNS GLLPNSFKII SSCLKTVSAN ATNVASSVRS AGASVAASIS AAEDDKDQVT  60
   61 WAGFGILELG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.69897
Match:	1l0qA
Description:	Surface layer protein
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [71-680]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QHVTRHVLLL GYQNGFQVFD VEDASNFNEL VSKRGGPVSF LQMQPLPARS GDHEGFWNSH  60
   61 PLLLVVAGDE TNGTGLGHSF SQNGSLARDG SSDSKAGDAI NYPTTVRFYS LRSHSYVYVL 120
  121 RFRSSVCMIR CSSRVVAVGL ANQIYCVDAL TLENKFSVLT YPVPQPVRQG TTRVNVGYGP 180
  181 MAVGPRWLAY ASKSSMTMKT GRLSPQTFTS SPSLSPSSSS GGSSFMARYA MESSKQLANG 240
  241 LINLGDMGYK TLSKYCQDML PDGSTSPASP NAIWKVGGVS GSDAENAGMV AVKDLVSGAL 300
  301 VSQFKAHTSP ISALCFDPSG TLLVTASVCG NNINVFQIMP SRSHNAPGDL SYEWESSHVH 360
  361 LFKLHRGITS AIVQDICFSQ QSQWVAIISS KGTCHIFVLN SSGSDAAFQP CEGEEPTRLP 420
  421 ASSLPWWFTQ SLSSNQQSLS PPTAVALSVV SRIKYSSFGW LNTVSNATTA ATGKVFVPSG 480
  481 AVAAVFHKSV THDLQLNSRT NALEHILVYT PSGHVVQHEL LPSVCTESPE NGLRVQKTSH 540
  541 VQVQEDDLRV KVEPIQWWDV CRRSDWLETE ERLPKSITEK QYDLETVSNH LTSHEDACLS 600
  601 LDMNSHFSED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.0
Match:	1pguA
Description:	Actin interacting protein 1
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [681-743]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KYLKSCSEKP PERSHCYLSN FEVKVTSGML PVWQNSKISF HVMDSPRDSS STGGEFEIEK  60
   61 VPA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.39794
Match:	1nr0A
Description:	Actin interacting protein 1
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [744-959]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HELEIKQKKL LPVFDHFHST KATLEDRFSM KCYHTSATGS HQVNGKICQD IINCHSKPGS  60
   61 IESAESSEEG STKQMENLHD SDHMSNSIKS SLPLYPTVNG IYKEIEKNNA NGWMEKPVTA 120
  121 KLSTLKETRI TNGFTTPPIL TDSVNEQMLS TGKPPMGFGF ALHEEHCKAV ADPKEEHLKK 180
  181 KLDEVTNVHH LNVNNNNTEK LQGDKMVHGM VSFVGD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.045757
Match:	1trjA
Description:	Homology Model of Yeast RACK1 Protein fitted into 11.7A cryo-EM map of Yeast 80S Ribosome
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits