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Protein Overview: PUB04_ORYSJ

General Information:
Name(s) found: PUB04_ORYSJ [Swiss-Prot]
Description(s) found:
Found 3 descriptions.
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  • U-box domain-containing protein 4 OS=Oryza sativa subsp. japonica GN=PUB4 PE=2 SV=1 [Swiss-Prot]
    • Organism: Oryza sativa Japonica Group
    Length: 728 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAASASSP VEFLLRRPAP RRRRLPLAGA FFAPTGLAGA TLLRAVASLA ASLVAGARPP  60
   61 SQRRNVDALA RRLALLSAIL ESILLDTAAA GAFSDAANLC FRELYVVLFR AELLVSYVAS 120
  121 AGRAWALLRS PHLAASFRDL DAELAVVLDV LPAASLRLSH DATGLLDLLR AHCRCRAPAQ 180
  181 YHDPDEAALR ERLMDALRQF DLGQPPDHPS LQSLLADMGI STAASCRAEI DYLEEQILSQ 240
  241 EEDTDLPLVG SVLALLRYCL FAVFDPSNAK ALRDWPLSGN RQRLLSIGGG DDTSFSVPKE 300
  301 FSCPISLDLM RDPVVASTGQ TYDRPSIIQW IEEGHSTCPN SGQTLADHRL VPNRALRSLI 360
  361 SQWCGVYGLQ YDSPESNEGM AECVAASCSS RAAMEANKAT ARILVRMLED GSENVKAVAA 420
  421 KEIRLLAKTG KQNRAFIADL GAIPLLCRLL LSNDWMAQEN AVTALLNLSI FEPNKGRIME 480
  481 QEGCLRLIVG VLQNGWTTEA KENAAATLFS LSVVHNFKKL IMNEPGAVEE LASMLTKGTS 540
  541 RGKKDAVMAL FNLSTHPESS ARMLESCAVV ALIQSLRNDT VSEEAAGALA LLMKQPSIVH 600
  601 LVGSSETVIT SLVGLMRRGT PKGKENAVSA LYEICRRGGS ALVQRVAKIP GLNTVIQTIT 660
  661 LNGTKRAKKK ASLIVKMCQR SQMPSAMALG STLTVVDRSL VGNNTLRRAA SFGSGELSNP 720
  721 ISISVQVP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..337] PSI-BLAST 23.0 Crystal structure of the CHIP U-box E3 ubiquitin ligase
    2 View Details [338..728] PSI-BLAST 46.0 Crystal structure of the exportin Cse1p complexed with its cargo ( Kap60p) and RanGTP


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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