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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PUB04_ORYSJ
Protein type: Globular with Signal Peptide
Type Confidence: 0.88
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAASASSP VEFLLRRPAP RRRRLPLAGA FFAPTGLAGA TLLRAVASLA ASLVAGARPP  60
   61 SQRRNVDALA RRLALLSAIL ESILLDTAAA GAFSDAANLC FRELYVVLFR AELLVSYVAS 120
  121 AGRAWALLRS PHLAASFRDL DAELAVVLDV LPAASLRLSH DATGLLDLLR AHCRCRAPAQ 180
  181 YHDPDEAALR ERLMDALRQF DLGQPPDHPS LQSLLADMGI STAASCRAEI DYLEEQILSQ 240
  241 EEDTDLPLVG SVLALLRYCL FAVFDPSNAK ALRDWPLSGN RQRLLSIGGG DDTSFSVPKE 300
  301 FSCPISLDLM RDPVVASTGQ TYDRPSIIQW IEEGHSTCPN SGQTLADHRL VPNRALRSLI 360
  361 SQWCGVYGLQ YDSPESNEGM AECVAASCSS RAAMEANKAT ARILVRMLED GSENVKAVAA 420
  421 KEIRLLAKTG KQNRAFIADL GAIPLLCRLL LSNDWMAQEN AVTALLNLSI FEPNKGRIME 480
  481 QEGCLRLIVG VLQNGWTTEA KENAAATLFS LSVVHNFKKL IMNEPGAVEE LASMLTKGTS 540
  541 RGKKDAVMAL FNLSTHPESS ARMLESCAVV ALIQSLRNDT VSEEAAGALA LLMKQPSIVH 600
  601 LVGSSETVIT SLVGLMRRGT PKGKENAVSA LYEICRRGGS ALVQRVAKIP GLNTVIQTIT 660
  661 LNGTKRAKKK ASLIVKMCQR SQMPSAMALG STLTVVDRSL VGNNTLRRAA SFGSGELSNP 720
  721 ISISVQVP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle