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Protein Overview: CALR2_ARATH

General Information:
Name(s) found: CALR2_ARATH [Swiss-Prot]
Description(s) found:
Found 11 descriptions.
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  • Calreticulin-2 OS=Arabidopsis thaliana GN=CRT2 PE=1 SV=3 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 424 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IDA]
    endoplasmic reticulum [IDA]
    vacuole [IDA]
    Biological Process: response to oxidative stress [IDA]
    response to salt stress [IEP]
    Molecular Function: calcium ion binding [IEA][ISS]
    unfolded protein binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKMIPSLVS LILIGLVAIA SAAVIFEERF DDGWENRWVK SEWKKDDNTA GEWKHTAGNW  60
   61 SGDANDKGIQ TSEDYRFYAI SAEFPEFSNK DKTLVFQFSV KHEQKLDCGG GYMKLLSGDV 120
  121 DQKKFGGDTP YSIMFGPDIC GYSTKKVHAI LTYNEANHLI KKDVPCETDQ LTHVYTFILR 180
  181 PDATYSILID NVEKQTGSLY SDWDLLPPKK IKDPSAKKPE DWDEQEYISD PEDKKPDGYD 240
  241 DIPKEIPDTD SKKPEDWDDE EDGEWTAPTI PNPEYMGEWK PKQIKNPNYK GKWEAPLIDN 300
  301 PDFKDDPELY VFPKLKYVGL ELWQVKSGSL FDNVLICDDP DYAKKLADET WGKLKDAEKA 360
  361 AFDEAEKKNE EEESKDAPAE SDAEDEPEDD EGGDDSDSES KAEETKSVDS EETSEKDATA 420
  421 HDEL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..354] PSI-BLAST 127.0 Calnexin
    2 View Details [355..424] FFAS03 0.997 50S subunit

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • unfolded protein binding
    		•  2.94586353433162 bayes_pls_golite062009
  • binding
    		•  2.22628447073433 bayes_pls_golite062009
  • protein binding
    		•  1.59690189281529 bayes_pls_golite062009
  • integrin binding
    		•  0.44914470874038 bayes_pls_golite062009
  • carbohydrate binding
    		•  0.315905766704983 bayes_pls_golite062009
  • protein complex binding
    		•  0.283682917345071 bayes_pls_golite062009
  • complement component C1q binding
    		•  0.263125963729881 bayes_pls_golite062009
  • ion binding
    		•  0.222418863848902 bayes_pls_golite062009
  • cation binding
    		•  0.211029876587877 bayes_pls_golite062009
  • metal ion binding
    		•  0.211029876587877 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.138676484096114 bayes_pls_golite062009
  • calcium ion binding
    		•  0.0419680638917248 bayes_pls_golite062009
  • chaperone binding
    		•  0.0327049405271921 bayes_pls_golite062009
  • receptor binding
    		•  0.00136269572479586 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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