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Protein Overview: PTR17_ARATH

General Information:
Name(s) found: PTR17_ARATH [Swiss-Prot]
Description(s) found:
Found 10 descriptions.
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  • Protein NRT1/ PTR FAMILY 8.5 OS=Arabidopsis thaliana GN=NPF8.5 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 590 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEA][ISS]
    Biological Process: oligopeptide transport [IEA][ISS]
    Molecular Function: transporter activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNSNEEDER RILDVEESLL TQEEVNNHLT GLSSTAEDGS IDIYGNPPSK KKTGNWKACP  60
   61 FILGNECCER LAYYGIAKNL ITYYTSELHE SNVSAASDVM IWQGTCYITP LIGAVIADSY 120
  121 WGRYWTIASF SAIYFIGMAL LTLSASLPVL KPAACAGVAA ALCSPATTVQ YAVFFTGLYL 180
  181 IALGTGGIKP CVSSFGADQF DDTDPRERVR KASFFNWFYF SINIGSFISS TLLVWVQENV 240
  241 GWGLGFLIPT VFMGVSIASF FIGTPLYRFQ KPGGSPITRV CQVLVAAYRK LKLNLPEDIS 300
  301 FLYETREKNS MIAGSRKIQH TDGYKFLDKA AVISEYESKS GAFSNPWKLC TVTQVEEVKT 360
  361 LIRMFPIWAS GIVYSVLYSQ ISTLFVQQGR SMNRIIRSFE IPPASFGVFD TLIVLISIPI 420
  421 YDRFLVPFVR RFTGIPKGLT DLQRMGIGLF LSVLSIAAAA IVETVRLQLA QDFVAMSIFW 480
  481 QIPQYILMGI AEVFFFIGRV EFFYDESPDA MRSVCSALAL LNTAVGSYLS SLILTLVAYF 540
  541 TALGGKDGWV PDDLNKGHLD YFFWLLVSLG LVNIPVYALI CVKHTKKKAL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..474] PSI-BLAST 4.39794 Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
    2 View Details [475..590] FFAS03 0.965 Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transporter activity
    		•  4.09176719149278 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  3.59744164024479 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  3.5865018981083 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  3.54194478414824 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  2.21266150105753 bayes_pls_golite062009
  • organic acid transmembrane transporter activity
    		•  2.15783210522667 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  1.79369588808394 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  1.59419818573076 bayes_pls_golite062009
  • binding
    		•  1.26757615356623 bayes_pls_golite062009
  • secondary active transmembrane transporter activity
    		•  1.22264637452409 bayes_pls_golite062009
  • polyol transmembrane transporter activity
    		•  0.924836669821548 bayes_pls_golite062009
  • alcohol transmembrane transporter activity
    		•  0.924836669821548 bayes_pls_golite062009
  • glycerol transmembrane transporter activity
    		•  0.812001619402678 bayes_pls_golite062009
  • symporter activity
    		•  0.74591237387473 bayes_pls_golite062009
  • solute:cation symporter activity
    		•  0.74591237387473 bayes_pls_golite062009
  • cation:sugar symporter activity
    		•  0.143419068761182 bayes_pls_golite062009
  • sugar:hydrogen symporter activity
    		•  0.143419068761182 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle