YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTR17_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	123	0.78
Transmembrane Helix	124	147	0.81
Non-Cytoplasmic	148	153	0.43
Transmembrane Helix	154	188	0.60
Cytoplasmic	189	214	0.84
Transmembrane Helix	215	236	0.93
Non-Cytoplasmic	237	243	0.81
Transmembrane Helix	244	264	0.93
Cytoplasmic	265	363	0.97
Transmembrane Helix	364	386	0.85
Non-Cytoplasmic	387	403	0.89
Transmembrane Helix	404	425	0.88
Cytoplasmic	426	444	0.90
Transmembrane Helix	445	465	0.90
Non-Cytoplasmic	466	481	0.80
Transmembrane Helix	482	503	0.86
Cytoplasmic	504	517	0.92
Transmembrane Helix	518	542	0.89
Non-Cytoplasmic	543	560	0.94
Transmembrane Helix	561	581	0.96
Cytoplasmic	582	590	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNSNEEDER RILDVEESLL TQEEVNNHLT GLSSTAEDGS IDIYGNPPSK KKTGNWKACP  60
   61 FILGNECCER LAYYGIAKNL ITYYTSELHE SNVSAASDVM IWQGTCYITP LIGAVIADSY 120
  121 WGRYWTIASF SAIYFIGMAL LTLSASLPVL KPAACAGVAA ALCSPATTVQ YAVFFTGLYL 180
  181 IALGTGGIKP CVSSFGADQF DDTDPRERVR KASFFNWFYF SINIGSFISS TLLVWVQENV 240
  241 GWGLGFLIPT VFMGVSIASF FIGTPLYRFQ KPGGSPITRV CQVLVAAYRK LKLNLPEDIS 300
  301 FLYETREKNS MIAGSRKIQH TDGYKFLDKA AVISEYESKS GAFSNPWKLC TVTQVEEVKT 360
  361 LIRMFPIWAS GIVYSVLYSQ ISTLFVQQGR SMNRIIRSFE IPPASFGVFD TLIVLISIPI 420
  421 YDRFLVPFVR RFTGIPKGLT DLQRMGIGLF LSVLSIAAAA IVETVRLQLA QDFVAMSIFW 480
  481 QIPQYILMGI AEVFFFIGRV EFFYDESPDA MRSVCSALAL LNTAVGSYLS SLILTLVAYF 540
  541 TALGGKDGWV PDDLNKGHLD YFFWLLVSLG LVNIPVYALI CVKHTKKKAL