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Protein Overview: gi|190404562

General Information:
Name(s) found: gi|190404562 [NCBI NR]
Description(s) found:
  • gi|190404562|gb|EDV07829.1| hypothetical protein SCRG_00023 [Saccharomyces cerevisiae RM11-1a] [NCBI NR]
    • Organism: Saccharomyces cerevisiae RM11-1a
    Length: 772 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDINSNASVS PRPDGLPMTA GYNSASGKVR NSIRSIINHP EDSARAKERS ETNSPKNNGN  60
   61 KKPRKKRKTF SCDTCRRVKT RCDFEPFIGK CYRCNVLQLD CSLARNKDNE ILNTLREDGL 120
  121 LKKINSINHN LGSFSHLNAD SPNESQSSFE KNGTVNFDNY MIDKRLSSLE EHIKSLHQKM 180
  181 DLIITTAKMS YNSDIKGPGD DIQNVDFSSN KTYDSRLTSG SETIRKTGEY RKENLFLNGF 240
  241 KLKESPLKLL HDIDERLFPS KATSKAAKLA GQQRPYAVAR VNFLHFYENN QELCHKLAKE 300
  301 FLVRSHFWII PGGRKEIDVE YAHSHLFITS VFTIIAMSFA DNDKYAAEQE ILYPLVERLL 360
  361 TNTLTMFEKL TAFDIEAILY CCMFHISRKA KRYRQLKFNS LVLSNFALNS LLHVIDFYQI 420
  421 KDRVLVKEVY NPEDLYHLRI LNSLTACYLE YSISYGDIRE QDDMLKEFNK LVAKFPQANF 480
  481 GDDIKISEIN LGDIVNGIFI NLKNYFAQCL DDFNNDRYGG NADTFIFVFP ELNYWLKNWE 540
  541 ELLAKDGAGV LLFTFDFYHI MICRTFITEF SSTLKSNQRF LKLILNTMKE HSFSLLNGFL 600
  601 RLPPTLIRGA PIFTCHQLVY ACLTLCDYLY WFDSSERQRV LSLCTKVYWH LSTIGEKMNE 660
  661 ATDNVGKIIK SIIDTSKTRI NFGSLSKENS DNDKMSTNAN NYTGAGNLHA AKPATSPTNV 720
  721 GTLHENLSSS HFMIPDVDQF NSFEDFFQDF FDSLKPNSQK MFTSDKKTEQ TT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..151] PSI-BLAST 12.09691 Hap1 (Cyp1); HAP1
    2 View Details [152..342] deduced N/A No confident structure predictions are available.
    3 View Details [343..533]
    [574..681]    		 ORFEUS 7.33 Hemolysin E (HlyE, ClyA, SheA)
    4 View Details [534..573] ORFEUS 7.33 Hemolysin E (HlyE, ClyA, SheA)
    5 View Details [682..772] deduced N/A Confident ab initio structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • DNA binding
    		•  2.84103204571231 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.75876859131052 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.74384406575369 bayes_pls_golite062009
  • binding
    		•  2.17040631935413 bayes_pls_golite062009
  • transcription factor activity
    		•  1.58356557490942 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.04526784942456 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.96356124803142 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  0.81674649742763 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.87

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle