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Protein Overview: gi|205322960, gi...

General Information:
Name(s) found: gi|205357231 [NCBI NR]
gi|205322960 [NCBI NR]
Description(s) found:
Found 2 descriptions.
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  • gi|205357231|ref|ZP_02346082.2| HTH-type transcriptional regulator ChbR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] [NCBI NR]
  • gi|205322960|gb|EDZ10799.1| HTH-type transcriptional regulator ChbR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] [NCBI NR]
    • Organism: Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29
    Length: 280 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMQLQVNATE IKTVYEQQLF NGKNFHVFIY NKTESVTGLH QHDYYEFTLV LTGRYYQEIN  60
   61 GKRVLLERGD FVFIPVGSNH QSFYEFGATR ILNVGISKRF FEQHYLPLLP FCFVASQVYR 120
  121 ANSTFLTYIE TVIASLNFRG NGLDEFIEVV TFYIINRLRH YREEQVYDDI PQWLKATVEI 180
  181 MHDKTQFGEH ALENMVRLSA KSQEYLTRAT RRYYSKTPMQ IINEIRINFA KKQLEMTNYS 240
  241 VTDIAYEAGY SSPSLFIKTF KKMTSFTPNS YRKRLTEINE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..167] PSI-BLAST 7.39794 Regulatory protein AraC
    2 View Details [168..280] PSI-BLAST 19.0 Rob transcription factor, N-terminal domain; Rob transcription factor, C-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • transcription regulator activity
    		•  3.57523737355937 bayes_pls_golite062009
  • DNA binding
    		•  3.00143272905695 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.89825020286436 bayes_pls_golite062009
  • transcription factor activity
    		•  2.53664874743748 bayes_pls_golite062009
  • binding
    		•  1.68817361068715 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.46503550280898 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.24108783215685 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.20862059645422 bayes_pls_golite062009
  • protein binding
    		•  0.111941607625758 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle