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Protein Overview: PKL_ARATH

General Information:
Name(s) found: PKL_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|75193642|sp|Q9S775.1|PKL_ARATH RecName: Full=CHD3-type chromatin-remodeling factor PICKLE; AltName: Full=Protein GYMNOS [NCBI NR]
  • gi|6478518|gb|AAF13875.1|AF185577_1 chromatin remodeling factor CHD3 [Arabidopsis thaliana] [NCBI NR]
  • gi|6318930|gb|AAF07084.1|AF185578_1 GYMNOS/PICKLE [Arabidopsis thaliana] [NCBI NR]
  • pir||T52301 GYMNOS/PICKLE protein [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|18400745|ref|NP_565587.1| PKL (PICKLE); ATPase/ DNA binding / DNA helicase [Arabidopsis thaliana] [NCBI NR]
  • CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana GN=PKL PE=1 SV=1 [Swiss-Prot]
  • chromatin remodeling factor CHD3 [Arabidopsis thaliana]gi|6318930|gb|AAF07084.1| GYMNOS/PICKLE [Arabidopsis thaliana]gi|25453560|pir||T52301 GYMNOS/PICKLE protein [imported] - Arabidopsis thalianagi|18400745|ref|NP_565587.1| chromatin remodeling factor [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Chromatin remodeling factor CHD3 (PICKLE) [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: CHR6, GYM, CHD3, SSL2, PKL | PKL (PICKLE) | chr2:10721490-10730842 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • PKL (PICKLE) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • chromatin remodeling factor CHD3 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • GYMNOS/PICKLE [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • CHD3-type chromatin remodeling factor PICKLE (Protein GYMNOS) [nr-271106-contam.fasta]
  • | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin remodeling factor CHD3 (PICKLE) | chr2:10714411-10723763 FORWARD LENGTH=1384 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 1384 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: chromatin modification [ISS]
    cell proliferation [IMP]
    root development [IMP]
    response to gibberellin stimulus [IMP]
    negative regulation of transcription [IMP]
    response to auxin stimulus [IMP]
    negative regulation of abscisic acid mediated signaling pathway [IMP]
    Molecular Function: ATPase activity [ISS]
    DNA binding [ISS]
    DNA helicase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLVERLRI RSDRKPVYNL DDSDDDDFVP KKDRTFEQVE AIVRTDAKEN ACQACGESTN  60
   61 LVSCNTCTYA FHAKCLVPPL KDASVENWRC PECVSPLNEI DKILDCEMRP TKSSEQGSSD 120
  121 AEPKPIFVKQ YLVKWKGLSY LHCSWVPEKE FQKAYKSNHR LKTRVNNFHR QMESFNNSED 180
  181 DFVAIRPEWT TVDRILACRE EDGELEYLVK YKELSYDECY WESESDISTF QNEIQRFKDV 240
  241 NSRTRRSKDV DHKRNPRDFQ QFDHTPEFLK GLLHPYQLEG LNFLRFSWSK QTHVILADEM 300
  301 GLGKTIQSIA LLASLFEENL IPHLVIAPLS TLRNWEREFA TWAPQMNVVM YFGTAQARAV 360
  361 IREHEFYLSK DQKKIKKKKS GQISSESKQK RIKFDVLLTS YEMINLDSAV LKPIKWECMI 420
  421 VDEGHRLKNK DSKLFSSLTQ YSSNHRILLT GTPLQNNLDE LFMLMHFLDA GKFGSLEEFQ 480
  481 EEFKDINQEE QISRLHKMLA PHLLRRVKKD VMKDMPPKKE LILRVDLSSL QKEYYKAIFT 540
  541 RNYQVLTKKG GAQISLNNIM MELRKVCCHP YMLEGVEPVI HDANEAFKQL LESCGKLQLL 600
  601 DKMMVKLKEQ GHRVLIYTQF QHMLDLLEDY CTHKKWQYER IDGKVGGAER QIRIDRFNAK 660
  661 NSNKFCFLLS TRAGGLGINL ATADTVIIYD SDWNPHADLQ AMARAHRLGQ TNKVMIYRLI 720
  721 NRGTIEERMM QLTKKKMVLE HLVVGKLKTQ NINQEELDDI IRYGSKELFA SEDDEAGKSG 780
  781 KIHYDDAAID KLLDRDLVEA EEVSVDDEEE NGFLKAFKVA NFEYIDENEA AALEAQRVAA 840
  841 ESKSSAGNSD RASYWEELLK DKFELHQAEE LNALGKRKRS RKQLVSIEED DLAGLEDVSS 900
  901 DGDESYEAES TDGEAAGQGV QTGRRPYRRK GRDNLEPTPL MEGEGRSFRV LGFNQSQRAI 960
  961 FVQTLMRYGA GNFDWKEFVP RLKQKTFEEI NEYGILFLKH IAEEIDENSP TFSDGVPKEG1020
 1021 LRIEDVLVRI ALLILVQEKV KFVEDHPGKP VFPSRILERF PGLRSGKIWK EEHDKIMIRA1080
 1081 VLKHGYGRWQ AIVDDKELGI QELICKELNF PHISLSAAEQ AGLQGQNGSG GSNPGAQTNQ1140
 1141 NPGSVITGNN NASADGAQVN SMFYYRDMQR RLVEFVKKRV LLLEKAMNYE YAEEYYGLGG1200
 1201 SSSIPTEEPE AEPKIADTVG VSFIEVDDEM LDGLPKTDPI TSEEIMGAAV DNNQARVEIA1260
 1261 QHYNQMCKLL DENARESVQA YVNNQPPSTK VNESFRALKS INGNINTILS ITSDQSKSHE1320
 1321 DDTKPDLNNV EMKDTAEETK PLRGGVVDLN VVEGEENIAE ASGSVDVKME EAKEEEKPKN1380
 1381 MVVD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..94] deduced N/A No confident structure predictions are available.
    2 View Details [95..242] PSI-BLAST 8.0 Tandem chromodomains of human CHD1 complexed with Histone H3 Tail containing trimethyllysine 4 and dimethylarginine 2
    3 View Details [243..827] PSI-BLAST 83.69897 Structure of the SWI2/SNF2 chromatin remodeling domain of eukaryotic Rad54
    4 View Details [828..909] Pfam 25.657577 No description for PF06465.5 was found. No confident structure predictions are available.
    5 View Details [910..1065] Pfam 98.337242 No description for PF06461.3 was found. No confident structure predictions are available.
    6 View Details [1066..1131] deduced N/A No confident structure predictions are available.
    7 View Details [1132..1384] MSA 6.253997 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle