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Protein Overview: gi|213852301

General Information:
Name(s) found: gi|213852301 [NCBI NR]
Description(s) found:
  • gi|213852301|ref|ZP_03381833.1| DNA-binding ATP-dependent protease La [Salmonella enterica subsp. enterica serovar Typhi str. M223] [NCBI NR]
    • Organism: Salmonella enterica subsp. enterica serovar Typhi str. M223
    Length: 784 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPERSERIE IPVLPLRDVV VYPHMVIPLF VGREKSIRCL EAAMDHDKKI MLVAQKEAST  60
   61 DEPGVNDLFT VGTVASILQM LKLPDGTVKV LVEGLQRARI SALSDNGEHF SAKAEYLDSP 120
  121 AIDEREQEVL VRTAISQFEG YIKLNKKIPP EVLTSLNSID DPARLADTIA AHMPLKLADK 180
  181 QSVLEMSDVN ERLEYLMAMM ESEIDLLQVE KRIRNRVKKQ MEKSQREYYL NEQMKAIQKE 240
  241 LGEMDDAPDE NEALKRKIDA AKMPKEAKEK AEAELQKLKM MSPMSAEATV VRGYIDWMVQ 300
  301 VPWNARSKVK KDLRQAQEIL DTDHYGLERV KDRILEYLAV QSRVNKIKGP ILCLVGPPGV 360
  361 GKTSLGQSIA KATGRKYVRM ALGGVRDEAE IRGHRRTYIG SMPGKLIQKM AKVGVKNPLF 420
  421 LLDEIDKMSS DMRGDPASAL LEVLDPEQNV AFSDHYLEVD YDLSDVMFVA TSNSMNIPAP 480
  481 LLDRMEVIRL SGYTEDEKLN IAKRHLLPKQ IERNALKKGE LTVDDSAIIG IIRYYTREAG 540
  541 VRSLEREISK LCRKAVKQLL LDKSLKHIEI NGDNLHDYLG VQRFDYGRAD SENRVGQVTG 600
  601 LAWTEVGGDL LTIETACVPG KGKLTYTGSL GEVMQESIQA ALTVVRARAE KLGINPDFYE 660
  661 KRDIHVHVPE GATPKDGPSA GIAMCTALVS CLTGNPVRAD VAMTGEITLR GQVLPIGGLK 720
  721 EKLLAAHRGG IKTVLIPFEN KRDLEEIPDN VIADLDIHPV KRIEEVLTLA LQNEPSGMQV 780
  781 VTAK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..116] PSI-BLAST 31.522879 Crystal structure of N-terminal domain of E.Coli Lon Protease
    2 View Details [117..493] FFAS03 4.88 N-terminal, ClpS-binding domain of ClpA, an Hsp100 chaperone; ClpA, an Hsp100 chaperone, AAA+ modules
    3 View Details [494..583] PSI-BLAST 6.69897 alpha-domain of ATPase
    4 View Details [584..651] Pfam 8.251812 No description for PF05362.4 was found. No confident structure predictions are available.
    5 View Details [652..784] PSI-BLAST 48.154902 Catalytic domain of E.coli Lon protease

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.679730538301274 bayes_pls_golite062009
  • protein binding
    		•  0.3997153647519 bayes_pls_golite062009
  • catalytic activity
    		•  0.147263815852997 bayes_pls_golite062009
    2
    Term Confidence Notes
  • hydrolase activity
    		•  2.01016895260654 bayes_pls_golite062009
  • binding
    		•  1.50490858850371 bayes_pls_golite062009
  • catalytic activity
    		•  0.942640875796745 bayes_pls_golite062009
  • protein binding
    		•  0.224801331525112 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.212617804904722 bayes_pls_golite062009
  • nucleotide binding
    		•  0.208306366193408 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.20666003262166 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.206647692922152 bayes_pls_golite062009
    3
    Term Confidence Notes
  • hydrolase activity
    		•  2.18454736627863 bayes_pls_golite062009
  • binding
    		•  1.56871478970164 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.428373955572763 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.424644011903671 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.424583288440993 bayes_pls_golite062009
  • nucleotide binding
    		•  0.422354428195324 bayes_pls_golite062009
  • protein binding
    		•  0.193768631623192 bayes_pls_golite062009
  • ATP binding
    		•  0.04834397972685 bayes_pls_golite062009
  • adenyl ribonucleotide binding
    		•  0.0149501427627318 bayes_pls_golite062009
  • adenyl nucleotide binding
    		•  0.00365326483311895 bayes_pls_golite062009
    4 No functions predicted.
    5
    Term Confidence Notes
  • hydrolase activity
    		•  1.18773479836745 bayes_pls_golite062009
  • catalytic activity
    		•  0.878454819018611 bayes_pls_golite062009
  • peptidase activity
    		•  0.677675533122378 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.543314877411748 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  0.444922294492883 bayes_pls_golite062009
  • binding
    		•  0.423668529068616 bayes_pls_golite062009
  • structural molecule activity
    		•  0.278122898090466 bayes_pls_golite062009
  • ribonuclease activity
    		•  0.214389253755211 bayes_pls_golite062009
  • protein binding
    		•  0.214066724623027 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle