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Protein Overview: gi|190405301

General Information:
Name(s) found: gi|190405301 [NCBI NR]
Description(s) found:
  • gi|190405301|gb|EDV08568.1| lipoyl ligase [Saccharomyces cerevisiae RM11-1a] [NCBI NR]
    • Organism: Saccharomyces cerevisiae RM11-1a
    Length: 328 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRCIRQSVC TNFNVCRRQC FSTYASALKE MTHPIKPSAQ TLRHLQFTQR IPFQKGLEIQ  60
   61 ETLVRANLDI KDIQSKIERK LIQLDEEYKG TATINDNEKR ILDKVMAMKP NPIILTFEFE 120
  121 PTYTGGKRIK KTMTPDQIAA YESFIPETQK DNPRPKFVQV ERGGQVTFHG PGQIVIYIIL 180
  181 DLKTFQSFPA KCLVSCIEQA TIRTLKNTKM CDDTDKPLNL DAMTTKDTGV WVENGKKKVA 240
  241 SVGIHVRRSI TSHGVAINVN TDLSYMNSFE MCGLKNTLTT SIMEQRPDAV VNVQSVAISF 300
  301 VKEMTKLLGI KTLERMQIDD VNILKKNP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..109] MSA 1.038992 View MSA. No confident structure predictions are available.
    2 View Details [110..267] Pfam 30.481486 Biotin/lipoate A/B protein ligase family No confident structure predictions are available.
    3 View Details [268..328] MSA 1.043994 View MSA. Confident ab initio structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • aminoacyl-tRNA ligase activity
    		•  4.83057889638134 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  4.8294067084702 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  4.8294067084702 bayes_pls_golite062009
  • ligase activity
    		•  3.51191116674556 bayes_pls_golite062009
  • catalytic activity
    		•  1.99372273395202 bayes_pls_golite062009
  • phenylalanine-tRNA ligase activity
    		•  1.57827239765705 bayes_pls_golite062009
  • serine-tRNA ligase activity
    		•  1.07048505740004 bayes_pls_golite062009
  • glycine-tRNA ligase activity
    		•  0.91005913703893 bayes_pls_golite062009
  • threonine-tRNA ligase activity
    		•  0.793195358470619 bayes_pls_golite062009
  • binding
    		•  0.521863822270226 bayes_pls_golite062009
  • alanine-tRNA ligase activity
    		•  0.435766663027965 bayes_pls_golite062009
  • histidine-tRNA ligase activity
    		•  0.334773354741163 bayes_pls_golite062009
  • lysine-tRNA ligase activity
    		•  0.333541891861949 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.281662799812287 bayes_pls_golite062009
  • ATP binding
    		•  0.18403217430648 bayes_pls_golite062009
  • adenyl ribonucleotide binding
    		•  0.145955341735342 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.134753238769136 bayes_pls_golite062009
  • adenyl nucleotide binding
    		•  0.127823774098159 bayes_pls_golite062009
  • DNA binding
    		•  0.0309732052586011 bayes_pls_golite062009
  • protein binding
    		•  0.0101455326199739 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle