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Protein Overview: gi|39654823

General Information:
Name(s) found: gi|39654823 [NCBI NR]
Description(s) found:
Found 2 descriptions.
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  • gi|39654823|pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-Tocopherol Transfer Protein Bound To Its Ligand [NCBI NR]
    • Organism: Homo sapiens
    Length: 262 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSHMSPLLQP GLAALRRRAR EAGVPLAPLP LTDSFLLRFL RARDFDLDLA WRLLKNYYKW  60
   61 RAECPEISAD LHPRSIIGLL KAGYHGVLRS RDPTGSKVLI YRIAHWDPKV FTAYDVFRVS 120
  121 LITSELIVQE VETQRNGIKA IFDLEGWQFS HAFQITPSVA KKIAAVLTDS FPLKVRGIHL 180
  181 INEPVIFHAV FSXIKPFLTE KIKERIHXHG NNYKQSLLQH FPDILPLEYG GEEFSXEDIC 240
  241 QEWTNFIXKS EDYLSSISES IQ

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Noble WS, et al. (2009) Manuscript in preparation. gi|112491310 gi|13786858 gi|14277752, gi|... gi|150261449 gi|162330234, gi... gi|197725196 gi|219109210, gi... gi|3659984 gi|39654823 gi|56554577 gi|56966260, gi|...

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..262] PSI-BLAST 56.09691 Crystal Structure of Human Alpha-Tocopherol Transfer Protein Bound to its Ligand

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • vitamin E binding
    		•  7.60287756659728 bayes_pls_golite062009
  • retinoid binding
    		•  2.55932836548393 bayes_pls_golite062009
  • isoprenoid binding
    		•  2.50048436206147 bayes_pls_golite062009
  • vitamin binding
    		•  1.77103204070558 bayes_pls_golite062009
  • binding
    		•  1.64101337554248 bayes_pls_golite062009
  • retinal binding
    		•  1.32654212303069 bayes_pls_golite062009
  • transporter activity
    		•  1.00447017621654 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.658164745879483 bayes_pls_golite062009
  • protein binding
    		•  0.408110742195811 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle