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Protein Overview: gi|45752676, gi|...

General Information:
Name(s) found: gi|45752676 [NCBI NR]
gi|40822853 [NCBI NR]
gi|15241269 [NCBI NR]
Description(s) found:
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  • gi|45752676|gb|AAS76236.1| At5g20110 [Arabidopsis thaliana] [NCBI NR]
  • gi|40822853|gb|AAR92244.1| At5g20110 [Arabidopsis thaliana] [NCBI NR]
  • gi|15241269|ref|NP_197511.1| dynein light chain, putative [Arabidopsis thaliana] [NCBI NR]
  • At5g20110 [Arabidopsis thaliana]gi|15241269|ref|NP_197511.1| dynein light chain, putative [Arabidopsis thaliana]gi|40822853|gb|AAR92244.1| At5g20110 [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Dynein light chain [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | dynein light chain, putative | chr5:6791544-6793255 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • microtubule motor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At5g20110 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Dynein light chain type 1 family protein | chr5:6791542-6793253 REVERSE LENGTH=209 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At5g20110 OS=Arabidopsis thaliana GN=At5g20110 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 209 amino acids

    Gene Ontology:
    Cellular Component: microtubule associated complex [IEA][ISS]
    Biological Process: microtubule-based process [IEA][ISS]
    Molecular Function: microtubule motor activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEERPKKSK KKSLMNFYKF SITSSKHSLI NPKSKPKIPI STPSISQQEV EEKPIVQSNK  60
   61 SHQNHVMRDI FELETTCSRN NERKKGGGAA EEGRKSVSHV ERDTAARIEA AAEMLTVRIL 120
  121 AADMPGFMQA HAFRCARMTL DSLEKFSSKH MAFNLKKEFD KGYGPAWHCI VGSSFGSFVT 180
  181 HSTGCFIYFS MDKLYVLLFK TKVRPASPH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..110] deduced N/A No confident structure predictions are available.
    2 View Details [111..209] PSI-BLAST 40.39794 Localisation of Dynein Light Chains 1 and 2 and their Pro-apoptotic Ligands

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • microtubule motor activity
    		•  9.69298846835381 bayes_pls_golite062009
  • motor activity
    		•  5.85494716006373 bayes_pls_golite062009
  • dynein intermediate chain binding
    		•  4.30226487277718 bayes_pls_golite062009
  • nitric-oxide synthase regulator activity
    		•  3.06572632418145 bayes_pls_golite062009
  • dynein binding
    		•  2.90318309608701 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  2.8232927372914 bayes_pls_golite062009
  • binding
    		•  2.04793419379986 bayes_pls_golite062009
  • protein binding
    		•  1.75479345161448 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  1.47503021587966 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  1.40860884968216 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  1.39154744890125 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  1.38919307572739 bayes_pls_golite062009
  • ATPase activity, coupled
    		•  1.01610422569891 bayes_pls_golite062009
  • ATPase activity
    		•  0.96367371812709 bayes_pls_golite062009
  • catalytic activity
    		•  0.448769452796145 bayes_pls_golite062009
  • hydrolase activity
    		•  0.442050017414837 bayes_pls_golite062009
  • protein dimerization activity
    		•  0.257276734446829 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.60

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle