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Protein Overview: VAP13_ARATH

General Information:
Name(s) found: VAP13_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|25054852|gb|AAN71916.1| putative proline-rich protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18411240|ref|NP_567153.1| vesicle-associated membrane family protein / VAMP family protein [Arabidopsis thaliana] [NCBI NR]
  • Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13 PE=2 SV=1 [Swiss-Prot]
  • putative proline-rich protein [Arabidopsis thaliana]gi|18411240|ref|NP_567153.1| vesicle-associated membrane family protein / VAMP family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Vesicle-associated membrane family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | vesicle-associated membrane family protein / VAMP family protein | chr4:70732-72085 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • structural molecule [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative proline-rich protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Plant VAMP (vesicle-associated membrane protein) family protein | chr4:70732-72085 REVERSE LENGTH=239 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 239 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: structural molecule activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTGDLVNIH PTELKFPFEL KKQSSCSMQL TNKTTTQCVA FKVKTTNPRK YCVRPNTGVV  60
   61 LPGDSCNVTV TMQAQKEAPL DMQCKDKFLV QTVVVSDGTT SKEVLAEMFN KEAGRVIEDF 120
  121 KLRVVYIPAN PPSPVPEGSE EGNSPMASLN DIASQSASLF DDVSRTFEET SEKSSEAWSM 180
  181 ISKLTEEKTS ATQQSQKLRL ELEMLRKETS KKQSGGHSLL LMLLVGLLGC VIGYLLNRI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..144] PSI-BLAST 32.39794 Solution structure of the MSP domain of mouse VAMP-associated proteinA
    2 View Details [145..239] MSA 4.100997 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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