YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VAP13_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTGDLVNIH PTELKFPFEL KKQSSCSMQL TNKTTTQCVA FKVKTTNPRK YCVRPNTGVV  60
   61 LPGDSCNVTV TMQAQKEAPL DMQCKDKFLV QTVVVSDGTT SKEVLAEMFN KEAGRVIEDF 120
  121 KLRVVYIPAN PPSPVPEGSE EGNSPMASLN DIASQSASLF DDVSRTFEET SEKSSEAWSM 180
  181 ISKLTEEKTS ATQQSQKLRL ELEMLRKETS KKQSGGHSLL LMLLVGLLGC VIGYLLNRI

Type	Start	End	Confidence
Cytoplasmic	1	214	0.67
Transmembrane Helix	215	236	0.94
Non-Cytoplasmic	237	239	0.60