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Protein Overview: CG9772-PD

General Information:
Name(s) found: CG9772-PD / FBpp0110535 [FlyBase]
Description(s) found:
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  • gi|25012422|gb|AAN71318.1| RE15215p [Drosophila melanogaster] [NCBI NR]
  • gi|116007922|ref|NP_001036659.1| CG9772, isoform D [Drosophila melanogaster] [NCBI NR]
  • gi|113194723|gb|ABI31121.1| CG9772, isoform D [Drosophila melanogaster] [NCBI NR]
  • This gene is referred to in FlyBase by the symbol Dmel\CG9772 (CG9772, FBgn0037236). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:161143..165287. It has the cytological map location 82A4. Its molecular function is unknown. Based on sequence similarity, it is predicted to be involved in the biological process</span>: ubiquitin-dependent protein catabolic process. 4 alleles are reported. No phenotypic data is available. It has 4 annotated transcripts and 4 annotated polypeptides. [FlyBase]
  • RE15215p [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • (AE003606) CG9772 gene product [alt 1] [Drosophila melanogaster] [yeastflysequest.fasta]
  • type=protein; loc=3R:complement(161265..161451,161508..161667,161731..162130,162191..162943); ID=FBpp0110535; name=CG9772-PD; parent=FBgn0037236,FBtr0111207; dbxref=FlyBase_Annotation_IDs:CG9772-PD,FlyBase:FBpp0110535,REFSEQ:NP_001036659,GB_protein:ABI311 [fly-100309-contam.fasta]
  • CG9772-PD, isoform D [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=3R:complement(161265..161451,161508..161667,161731..162130,162191..162943); ID=FBpp0110535; name=CG9772-PD; parent=FBgn0037236,FBtr0111207; dbxref=FlyBase_Annotation_IDs:CG9772-PD,FlyBase:FBpp0110535,REFSEQ:NP_001036659,GB_protein:ABI31121; MD5=9cf602fa1f4650d9647d3af03cdeb830; length=499; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3R:complement(161265..161451,161508..161667,161731..162130,162191..162943); ID=FBpp0110535; name=CG9772-PD; parent=FBgn0037236,FBtr0111207; dbxref=FlyBase_Annotation_IDs:CG9772-PD,FlyBase:FBpp0110535,REFSEQ:NP_001036659,GB_protein:ABI31121; MD5=9cf602fa1f4650d9647d3af03cdeb830; length=499; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • CG9772, isoform D OS=Drosophila melanogaster GN=CG9772 PE=2 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=3R:complement(161265..161451,161508..161667,161731..162130,162191..162943); ID=FBpp0110535; name=Skp2-PD; parent=FBgn0037236,FBtr0111207; dbxref=FlyBase_Annotation_IDs:CG9772-PD,FlyBase:FBpp0110535,REFSEQ:NP_001036659,GB_protein:ABI31121,FlyMine:FBpp0110535,modMine:FBpp0110535; MD5=9cf602fa1f4650d9647d3af03cdeb830; length=499; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
    • Organism: Drosophila melanogaster
    Length: 499 amino acids

    Gene Ontology:
    Cellular Component: SCF ubiquitin ligase complex [ISS]
    Biological Process: ubiquitin-dependent protein catabolic process [ISS]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIGMLDSEE SSSSALSAIA LAVSATSDDN SNETTPCASV SRMAHQLQHT QRLSLGSTGD  60
   61 ITLDSPAVED SLSMSRQSAE KLQILAQAKR SSLGSEGSGN SNSPSKRLRN PLAAVTCNNQ 120
  121 IDGTASLNFQ PSTSRLAQVR QAKKPSTTNI TTRIVAADSF FVFRTPAMSA HINSGINYFE 180
  181 RLSDEILLDI FKWLPKKTLL RMATVCRRFN RCSRDETLWT RLDLGLRTIR PGALEQIVRR 240
  241 GVLVIRLAQT SIQEPAFAPY TEVFRTRLQY LDLSMASITR SSLLTLLSHC RQLKKISLEN 300
  301 IELDDDICAE IAKNEALEAV NLTMASGLTS NSVRLMMESL TSLSSLNISW TDLSADAVTA 360
  361 LVTHISPNLI RLNIAGCRRV LFDSHVATLQ KRCPQLLELD LSDCNSLTPT VITAIMKFKM 420
  421 LEYLSVSRCY LIPATKFIEL KSMPSLTYLD IFGMLSDTAM EVLEKQLPKM GINKFIHSSV 480
  481 SRPTVGTRRT SIWGLRTRD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..391] PSI-BLAST 6.522879 Leucine rich effector protein YopM
    2 View Details [392..499] PSI-BLAST 25.69897 Skp2; Cyclin A/CDK2-associated p19, Skp2

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • protein binding
    		•  1.69661396118522 bayes_pls_golite062009
  • binding
    		•  1.23313855731605 bayes_pls_golite062009
  • receptor activity
    		•  0.823142813332745 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.710443686489925 bayes_pls_golite062009
  • transmembrane receptor activity
    		•  0.569410390698942 bayes_pls_golite062009
  • signal transducer activity
    		•  0.405945668463821 bayes_pls_golite062009
  • molecular transducer activity
    		•  0.405945668463821 bayes_pls_golite062009
  • protein kinase activity
    		•  0.0574120480524489 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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