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Protein Overview: gi|42794937, gi|...

General Information:
Name(s) found: gi|42794937 [NCBI NR]
gi|30690915 [NCBI NR]
Description(s) found:
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  • gi|42794937|gb|AAS45834.1| PCD/DCoH-like protein 2 [Arabidopsis thaliana] [NCBI NR]
  • gi|30690915|ref|NP_174274.2| dehydratase family [Arabidopsis thaliana] [NCBI NR]
  • PCD/DCoH-like protein 2 [Arabidopsis thaliana]gi|30690915|ref|NP_174274.2| dehydratase family [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Dehydratase family [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | dehydratase family | chr1:10435590-10437390 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • PCD/DCoH-like protein 2 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • dihydroxy-acid dehydratase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Transcriptional coactivator/pterin dehydratase | chr1:10435606-10437406 REVERSE LENGTH=187 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • PCD/DCoH-like protein 2 OS=Arabidopsis thaliana GN=pdl2 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 187 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: tetrahydrobiopterin biosynthetic process [IEA]
    Molecular Function: dihydroxy-acid dehydratase activity [ISS]
    4-alpha-hydroxytetrahydrobiopterin dehydratase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRLLLPKLF SISRTQVPAA SLFNNLYRRH KRFVHWTSKM STDSVRSSTT GGSASGARTF  60
   61 CSLADLSTKK CVPCNAKDLR AMTEQSAQDL LQKVAGWDLA NDNDTLKLHR SWRVKSFTKG 120
  121 LDFFQRVADI AESEGHHPDL HLVGWNNVKI EIWTHAIGGL TENDFILAAK INELQVEDLL 180
  181 RKKKVAK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..187] PSI-BLAST 32.39794 Crystal structure of DCoH2, a paralog of DCoH, the Dimerization Cofactor of HNF-1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • 4-alpha-hydroxytetrahydrobiopterin dehydratase activity
    		•  6.37440350862152 bayes_pls_golite062009
  • carbon-oxygen lyase activity
    		•  2.59083795856045 bayes_pls_golite062009
  • hydro-lyase activity
    		•  2.49246983898572 bayes_pls_golite062009
  • catalytic activity
    		•  1.77011790035856 bayes_pls_golite062009
  • lyase activity
    		•  0.381803429978296 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle