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Protein Overview: HSFB4_ARATH

General Information:
Name(s) found: HSFB4_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|75308799|sp|Q9C635.1|HSFB4_ARATH RecName: Full=Heat stress transcription factor B-4; Short=AtHsfB4; AltName: Full=AtHsf-02 [NCBI NR]
  • pir||C96511 probable heat shock transcription factor [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|225898010|dbj|BAH30337.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15220101|ref|NP_175142.1| AT-HSFB4; DNA binding / transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|12321016|gb|AAG50634.1|AC083835_19 heat shock transcription factor, putative [Arabidopsis thaliana] [NCBI NR]
  • Heat stress transcription factor B-4 OS=Arabidopsis thaliana GN=HSFB4 PE=2 SV=1 [Swiss-Prot]
  • heat shock transcription factor, putative [Arabidopsis thaliana]gi|15220101|ref|NP_175142.1| heat shock transcription factor family protein [Arabidopsis thaliana]gi|25296103|pir||C96511 probable heat shock transcription factor [imported] - Arabidopsis t [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Heat shock transcription factor family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: HSFB4, AT-HSFB4 | AT-HSFB4 (Arabidopsis thaliana heat shock transcription factor B4); DNA binding / transcription factor | chr1:17227344-17228623 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • heat shock transcription factor, putative [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • AT-HSFB4; DNA binding / transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: AT-HSFB4, HSFB4, SCZ | heat shock transcription factor B4 | chr1:17224904-17226183 FORWARD LENGTH=348 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 348 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: asymmetric cell division [IMP]
    Molecular Function: DNA binding [ISS]
    transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMMVENSYG GYGGGGGERI QLMVEGQGKA VPAPFLTKTY QLVDDPATDH VVSWGDDDTT  60
   61 FVVWRPPEFA RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KRGEKHLLCE 120
  121 IHRRKTSQMI PQQHSPFMSH HHAPPQIPFS GGSFFPLPPP RVTTPEEDHY WCDDSPPSRP 180
  181 RVIPQQIDTA AQVTALSEDN ERLRRSNTVL MSELAHMKKL YNDIIYFVQN HVKPVAPSNN 240
  241 SSYLSSFLQK QQQQQPPTLD YYNTATVNAT NLNALNSSPP TSQSSITVLE DDHTNHHDQS 300
  301 NMRKTKLFGV SLPSSKKRSH HFSDQTSKTR LVLDQSDLAL NLMTASTR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..143] PSI-BLAST 33.0 SOLUTION STRUCTURE OF THE DNA-BINDING DOMAIN OF DROSOPHILA HEAT SHOCK TRANSCRIPTION FACTOR
    2 View Details [144..348] MSA 3.212996 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.835523092977445 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.4843036104266 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.37117756729668 bayes_pls_golite062009
  • DNA binding
    		•  0.3118855114645 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle