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Protein Overview: UBP20_ARATH

General Information:
Name(s) found: UBP20_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|75262803|sp|Q9FPS7.1|UBP20_ARATH RecName: Full=Ubiquitin carboxyl-terminal hydrolase 20; AltName: Full=Ubiquitin thioesterase 20; AltName: Full=Ubiquitin-specific-processing protease 20; AltName: Full=Deubiquitinating enzyme 20; Short=AtUBP20 [NCBI NR]
  • gi|18414985|ref|NP_567544.1| UBP20 (UBIQUITIN-SPECIFIC PROTEASE 20); ubiquitin thiolesterase/ ubiquitin-specific protease [Arabidopsis thaliana] [NCBI NR]
  • gi|11993480|gb|AAG42758.1|AF302668_1 ubiquitin-specific protease 20 [Arabidopsis thaliana] [NCBI NR]
  • Ubiquitin carboxyl-terminal hydrolase 20 OS=Arabidopsis thaliana GN=UBP20 PE=2 SV=1 [Swiss-Prot]
  • ubiquitin-specific protease 20 [Arabidopsis thaliana]gi|18414985|ref|NP_567544.1| ubiquitin-specific protease 20, putative (UBP20) [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Ubiquitin-specific protease 20 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: UBP20 | UBP20 (UBIQUITIN-SPECIFIC PROTEASE 20); ubiquitin-specific protease | chr4:9939927-9942711 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • cysteine-type endopeptidase/ ubiquitin thiolesterase/ ubiquitin-specific protease [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ubiquitin-specific protease 20 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: UBP20 | ubiquitin-specific protease 20 | chr4:9939914-9942698 FORWARD LENGTH=695 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 695 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: ubiquitin-dependent protein catabolic process [IEA]
    Molecular Function: ubiquitin-specific protease activity [ISS]
    ubiquitin thiolesterase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLMAKPDVPS SILPRSSSIL PNSIETLDEN ESIEAQVNNV QSLALSSPNR DRSDDDDNNN  60
   61 NHDSVSIPPP IYDGYSSSSS DESQSVPSPP INLDHDDDEC QIPIRNTSQA LDDIDDDIWG 120
  121 DDDLPETRRP WTPNVSPGFG SDDDDDNDDD NSKNEPRKSL FYGFRQEPEP VTGVGAGLWN 180
  181 LGNSCFLNSV FQCFTHTVPL IESLLSFRYE VPCHCGNEFF CVIRAIRYHI EAALRPERCP 240
  241 IAPYFFFDNL NYFSPDFQRY QQEDAHEFLQ AFLEKLEICG SDRTSFRGDI TSQDVFSGRL 300
  301 ISGLRCCNCD YVSETYEKSV GLSLEIEDVD TLGSALESFT RVEKLDEQLT CDNCNEKVSK 360
  361 EKQLLLDKLP LVATFHLKRF KNNGLYMEKI YKHVKIPLEI DLQPYMRNIQ ENEVSTKYHL 420
  421 YALVEHFGYS VAYGHYSSYV RSAPKIWHHF DDSKVTRIDE DMVLSQDSYI LFYAREGTRW 480
  481 FSSVYEEMQP LVEASLLNSS PKSVLDSSTN GECLSEISYE NGDKASKPCD SAGVCNQHVK 540
  541 TKEDFVSLSN DDVFLSAESS SGEESPMGEL LDPLDPDDSY SPCTEKESDS CLAIERATIR 600
  601 DDFFPLLLDQ NQESSTSSPK LQERTFEMQL LQMEETTKSQ EPWKQPLSSI SNIADSMEAE 660
  661 FVYGDLMKKP SPRARELLDQ AISTNGSPPK KLKTT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..135] deduced N/A No confident structure predictions are available.
    2 View Details [136..476] PSI-BLAST 57.39794 No description for 2gfoA was found.
    3 View Details [477..695] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle