Protein Overview: gi|9931454

General Information:
Name(s) found:	gi\|9931454 [NCBI NR]
Description(s) found: SHOW ONLY BEST	gi\|9931454\|gb\|AAG02183.1\| MHC class II transactivator type IV [Rattus norvegicus] [NCBI NR] MHC class II transactivator type IV [Rattus norvegicus] [nrdb_11152004_Chlamydomonas] Tax_Id=10116 MHC class II transactivator type IV [EBI-IPI_rat_3.05_04-04-2005_origrev.fasta] Tax_Id=10116 MHC CLASS II TRANSACTIVATOR TYPE IV [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta] MHC class II transactivator type IV OS=Rattus norvegicus GN=Ciita [011711_HMR.fasta]
Organism:	Rattus norvegicus
Length:	1052 amino acids
Gene Ontology:
Cellular Component:	nucleus [IC]
Biological Process:	inflammatory response [IEP] negative regulation of transcription, DNA-dependent [IDA] positive regulation of transcription, DNA-dependent [IDA] negative regulation of transcription [UNKNOWN] response to interferon-gamma [UNKNOWN][IEA] response to antibiotic [UNKNOWN][IEA] regulation of transcription [IEA] positive regulation of transcription from RNA polymerase II promoter [UNKNOWN][IEA] positive regulation of MHC class II biosynthetic process [IDA][IEP] negative regulation of gene-specific transcription from RNA polymerase II promoter [UNKNOWN][IEA]
Molecular Function:	ATP binding [IEA] protein binding [UNKNOWN] ubiquitin binding [UNKNOWN][IEA] protein C-terminus binding [UNKNOWN][IEA] promoter binding [UNKNOWN][IEA] transcription activator activity [UNKNOWN][IDA] transcription repressor activity [UNKNOWN][IDA] protein complex binding [UNKNOWN][IEA] transcription activator binding [UNKNOWN][IEA]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELGSPEGSY LELLNSDADP LHLYHLYDQM DLAGEEEIEL NSETDMDTIN CDQFSKLLQD  60
   61 MEMDEETREA YANIAELDQY VFQDTQLEGL SKDLFIQHIG PEEGFGENVE GPAESGEKPQ 120
  121 KRRFPEEHAM DSKHRKLVPP SRTSLNYLDL PAGHIQIFTT LPQGLWQISG VGTGLSSVLV 180
  181 YHGEMPQVNQ LLSSSSPTVP SLPESPDRPG STSPFAPSTA DLPGMPEPAL TSRVNETEDT 240
  241 TPPSPCQEDP EPSIKLPKWP ESVERFQHSL QDKYQALPGS PSGPLVAMEL VRARLERGSN 300
  301 KSQERELATP DWTERQLAHG GLAEVLRVVG DSRRSRETQV VAVLGKAGQG KSHWARTVSH 360
  361 IWAQGQLPQY DFVFYVPCQC LDRPGDTYHL RDLLCPPNLQ PLAMNDEVID HIVRQPDRVL 420
  421 LILDAFEELE AQDSLLHGPC GPLSPEPCSL RGLLAGLFQR KLLRGCTLLL TARPRGRLAQ 480
  481 SLSKADAIFE VPSFSTKQAQ IYMRHYFENS GTAGSHDKAL GLLEGQPFLL THSHSPVLCS 540
  541 AVCQLSKALL DQGAGAQLPC TLTGLYVGLL GPAAQNSPPG ALVELAKLAW ELGRRHQSTL 600
  601 QETQFPSVEV KTWAVAQGLM QQTTEAQLAF SSFLLQCFLG AVWLAQCNEM KDKELPQYLA 660
  661 LTPRKKRPYD NWLEGVPRFL AGLVFQPRAH CLGALVEPAM AAVADRKRKV LTRYLKRLKL 720
  721 GTLRAGRLLE LLHCAHETQE PGIWKHVSHQ LPGHLSFLGT RLTAPDVYVL GRALETASQD 780
  781 FSLDLRQTGI EPSRLGDLVG LSCVTSFRAS LSDTMALWES LQHQGETQLL QAAEEKFTIE 840
  841 PFKAKSPKDV EDLDSLVQTQ RLRNPSADAA KDLPAIRDLK KLEFALGPVL GPQAFPTLAK 900
  901 ILPAFSSLQH LDLDSLSENK IGDKGVSKLS ATFPQLKALE TLNLSQNSIT DVGACKLAEA 960
  961 LPALAKSLLR LSLYNNCICD EGAKSLARVL PDMVSLRVMD VQFNKFTAVG AQQLTSSLQK1020
 1021 CPQVETLAMW TPTIPFGVQE HLQQLDARIS LR

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.83

Protein Overview: gi|9931454

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: