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Protein Overview: gi|42571939

General Information:
Name(s) found: gi|42571939 [NCBI NR]
Description(s) found:
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  • gi|42571939|ref|NP_974060.1| disease resistance protein-related [Arabidopsis thaliana] [NCBI NR]
  • disease resistance protein-related [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Disease resistance protein-related [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | disease resistance protein-related | chr1:22517281-22518157 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • transmembrane receptor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Toll-Interleukin-Resistance (TIR) domain family protein | chr1:22513616-22514492 REVERSE LENGTH=188 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Toll-Interleukin-Resistance (TIR) domain-containing protein OS=Arabidopsis thaliana GN=At1g61105 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 188 amino acids

    Gene Ontology:
    Cellular Component: intrinsic to membrane [IEA]
    Biological Process: signal transduction [IEA]
    innate immune response [IEA]
    Molecular Function: transmembrane receptor activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRLLTPCSK IAYTTRYIAN PTLPYPNPCD IFINHRGIDT KKTISGLLYD CFTRQRLTAF  60
   61 LDSKSLKPGD RLFVEIDMAI KACGVGIAVF SPRYCDSYFC LHELALLVKN KKRVIPIFCD 120
  121 VKPSELCVKD DKTRPAAEIR RFQLALEEAK YTVGLTFDTS NGDWSEFLAM ASDAVTKNLL 180
  181 EVEERIGD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..188] PSI-BLAST 22.39794 Toll-like receptor 1, TLR1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.261666574457319 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle