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Protein Overview: PPD4_ARATH

General Information:
Name(s) found: PPD4_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|30699237|ref|NP_565149.2| thylakoid lumenal 29.8 kDa protein [Arabidopsis thaliana] [NCBI NR]
  • gi|190358910|sp|O49292.2|PPD4_ARATH RecName: Full=PsbP domain-containing protein 4, chloroplastic; AltName: Full=OEC23-like protein 5; Flags: Precursor [NCBI NR]
  • PsbP domain-containing protein 4, chloroplastic OS=Arabidopsis thaliana GN=PPD4 PE=1 SV=2 [Swiss-Prot]
  • thylakoid lumenal 29.8 kDa protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • | Symbols: | thylakoid lumenal 29.8 kDa protein | chr1:28965470-28966769 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein | chr1:28960576-28961875 REVERSE LENGTH=260 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 260 amino acids

    Gene Ontology:
    Cellular Component: chloroplast stroma [IDA]
    chloroplast [IDA]
    thylakoid lumen [IDA]
    chloroplast thylakoid lumen [IDA]
    thylakoid [IDA]
    Biological Process: photosynthesis [IEA]
    Molecular Function: calcium ion binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMETALLRYC VNFSGHKKIS AHQRSNSEIP KTSPGGCEDE WCARVLSRRS VMASGLVSST  60
   61 TALAFPREGL AVVKQGLLAG RVPGLSEPDE EGWRTYRRPD EKSGGHGVGW SPIIPYAFSV 120
  121 PQDWNEVPVS IADLGGTEID LRFASPKEGR LSVIVAPVLR FADNLGDDVK IENIGQPAKV 180
  181 INAFGPEVIG ENVEGKVLSS NVAEHDGRLY YQFELEPPHV LITATAAGNR LYLFSVTGNG 240
  241 LQWKRHYKDL KRIASSFRIV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..110] deduced N/A No confident structure predictions are available.
    2 View Details [111..260] PSI-BLAST 48.0 Crystal Structure of PsbP Protein in the Oxygen-Evolving Complex of Photosystem II from Higher Plants


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle