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Protein Overview: gi|30681779, gi|...

General Information:
Name(s) found: gi|30681779 [NCBI NR]
gi|133778818 [NCBI NR]
Description(s) found:
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  • gi|30681779|ref|NP_172528.2| transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|133778818|gb|ABO38749.1| At1g10580 [Arabidopsis thaliana] [NCBI NR]
  • transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • | Symbols: | transducin family protein / WD-40 repeat family protein | chr1:3491561-3493666 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • nucleotide binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr1:3491560-3493665 REVERSE LENGTH=573 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At1g10580 OS=Arabidopsis thaliana GN=At1g10580 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 573 amino acids

    Gene Ontology:
    Cellular Component: CUL4 RING ubiquitin ligase complex [ISS]
    Biological Process: NONE FOUND
    Molecular Function: nucleotide binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLIQSYEEE DEAVASSPES SPPRMLKAKS SAPEVDDTAL ALTVANVNQS KSKPIDPTQH  60
   61 VVFYNPTHDQ LWAPMFGPAH PYAKDGIAQG MRNHKLGSVE DASIGSFGFE EQYHTFHKCG 120
  121 YAADPSGMNY VGDVEAFKKN DGLSVFNIPQ SEQKRRKIER SKEEREGEEK KEEIEPEAEN 180
  181 PETEAWLRKN RKSPWSRKKE VVQGELTEEQ KKYAEDHAKK KEEKGQQGET KGEHYADKST 240
  241 FHGKEEKDYQ GRSWIEAPKD AKANNDHCYI PKRLVHTWSG HTKGVSAIRF FPKQGHLLLS 300
  301 AGMDCKVKIW DVYNSGKCMR TYMGHAKAVR DICFSNDGSK FLTAGYDKNI KYWDTETGQV 360
  361 ISTFSTGKIP YVVKLNPDDD KQNILLAGMS DKKIVQWDIN TGEVTQEYDQ HLGAVNTITF 420
  421 VDNNRRFVTS SDDKSLRVWE FGIPVVIKYI SEPHMHSMPS ISVHPNGNWL AAQSLDNQIL 480
  481 IYSTRERFQL NKKKRFAGHI VAGYACQVNF SPDGRFVMSG DGEGKCWFWD WKSCKVFRTL 540
  541 KCHNGVCIGA EWHPLEQSKV ATCGWDGLIK YWD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..96] deduced N/A No confident structure predictions are available.
    2 View Details [97..260] PSI-BLAST 26.39794 No description for 2pm9A was found.
    3 View Details [261..485] FFAS03 6.34 No description for 2gnqA was found.
    4 View Details [486..573] PSI-BLAST 79.30103 No description for 2gnqA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle