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View Structure Prediction Details

Protein: gi|30681779, gi|...
Organism: Arabidopsis thaliana
Length: 573 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30681779, gi|....

Description E-value Query
Range
Subject
Range
gi|186464325, gi... - gi|23128981|ref|ZP_00110817.1| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi|18668187...
597.0 [0..11] [573..1169]

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Predicted Domain #1
Region A:
Residues: [1-96]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLIQSYEEE DEAVASSPES SPPRMLKAKS SAPEVDDTAL ALTVANVNQS KSKPIDPTQH  60
   61 VVFYNPTHDQ LWAPMFGPAH PYAKDGIAQG MRNHKL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [97-260]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSVEDASIGS FGFEEQYHTF HKCGYAADPS GMNYVGDVEA FKKNDGLSVF NIPQSEQKRR  60
   61 KIERSKEERE GEEKKEEIEP EAENPETEAW LRKNRKSPWS RKKEVVQGEL TEEQKKYAED 120
  121 HAKKKEEKGQ QGETKGEHYA DKSTFHGKEE KDYQGRSWIE APKD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.39794
Match: 2pm9A
Description: No description for 2pm9A was found.

Predicted Domain #3
Region A:
Residues: [261-485]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKANNDHCYI PKRLVHTWSG HTKGVSAIRF FPKQGHLLLS AGMDCKVKIW DVYNSGKCMR  60
   61 TYMGHAKAVR DICFSNDGSK FLTAGYDKNI KYWDTETGQV ISTFSTGKIP YVVKLNPDDD 120
  121 KQNILLAGMS DKKIVQWDIN TGEVTQEYDQ HLGAVNTITF VDNNRRFVTS SDDKSLRVWE 180
  181 FGIPVVIKYI SEPHMHSMPS ISVHPNGNWL AAQSLDNQIL IYSTR

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 6.34
Match: 2gnqA
Description: No description for 2gnqA was found.

Predicted Domain #4
Region A:
Residues: [486-573]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ERFQLNKKKR FAGHIVAGYA CQVNFSPDGR FVMSGDGEGK CWFWDWKSCK VFRTLKCHNG  60
   61 VCIGAEWHPL EQSKVATCGW DGLIKYWD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 79.30103
Match: 2gnqA
Description: No description for 2gnqA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle