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View Structure Prediction Details

Protein: gi|30681779, gi|...
Organism: Arabidopsis thaliana
Length: 573 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30681779, gi|....

Description E-value Query
Range
Subject
Range
gi|186464325, gi... - gi|23128981|ref|ZP_00110817.1| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi|18668187...
597.0 [0..11] [573..1169]

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Predicted Domain #1
Region A:
Residues: [1-96]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLIQSYEEE DEAVASSPES SPPRMLKAKS SAPEVDDTAL ALTVANVNQS KSKPIDPTQH  60
   61 VVFYNPTHDQ LWAPMFGPAH PYAKDGIAQG MRNHKL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [97-260]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSVEDASIGS FGFEEQYHTF HKCGYAADPS GMNYVGDVEA FKKNDGLSVF NIPQSEQKRR  60
   61 KIERSKEERE GEEKKEEIEP EAENPETEAW LRKNRKSPWS RKKEVVQGEL TEEQKKYAED 120
  121 HAKKKEEKGQ QGETKGEHYA DKSTFHGKEE KDYQGRSWIE APKD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.39794
Match: 2pm9A
Description: No description for 2pm9A was found.

Predicted Domain #3
Region A:
Residues: [261-485]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKANNDHCYI PKRLVHTWSG HTKGVSAIRF FPKQGHLLLS AGMDCKVKIW DVYNSGKCMR  60
   61 TYMGHAKAVR DICFSNDGSK FLTAGYDKNI KYWDTETGQV ISTFSTGKIP YVVKLNPDDD 120
  121 KQNILLAGMS DKKIVQWDIN TGEVTQEYDQ HLGAVNTITF VDNNRRFVTS SDDKSLRVWE 180
  181 FGIPVVIKYI SEPHMHSMPS ISVHPNGNWL AAQSLDNQIL IYSTR

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 6.34
Match: 2gnqA
Description: No description for 2gnqA was found.

Predicted Domain #4
Region A:
Residues: [486-573]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ERFQLNKKKR FAGHIVAGYA CQVNFSPDGR FVMSGDGEGK CWFWDWKSCK VFRTLKCHNG  60
   61 VCIGAEWHPL EQSKVATCGW DGLIKYWD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 79.30103
Match: 2gnqA
Description: No description for 2gnqA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle