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Protein Overview: PUB58_ARATH

General Information:
Name(s) found: PUB58_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|172044684|sp|Q9SGT2.2|PUB58_ARATH RecName: Full=Putative U-box domain-containing protein 58; AltName: Full=Plant U-box protein 58 [NCBI NR]
  • gi|15222827|ref|NP_176000.1| U-box domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • Putative U-box domain-containing protein 58 OS=Arabidopsis thaliana GN=PUB58 PE=3 SV=2 [Swiss-Prot]
  • U-box domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 U-box domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | U-box domain-containing protein | chr1:20964021-20965535 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • ubiquitin-protein ligase [Arabidopsis thaliana] [nr-271106-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 437 amino acids

    Gene Ontology:
    Cellular Component: ubiquitin ligase complex [IEA]
    Biological Process: RNA metabolic process [IEA]
    protein ubiquitination [IEA]
    Molecular Function: ubiquitin-protein ligase activity [IEA]
    protein binding [IEA]
    binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVENSYVLFA RLCVELFHEL PPLPSDESHG DITTFERLFL RKCRIELENA SPKTEHLPLV  60
   61 YVDETNYYRF IKTVRVLAEV YKNSKITETT RKSMIQVLMN PILPPERITD AMNLFRSIIG 120
  121 KLADFHFSDE KFNQLVRSSR VVELEGNYNE EVKLRKEAED ALAMKKEDVE MMEQLLESYK 180
  181 EEQGKLQLQA KALEHKLEAE LRHRKETETL LAIERDRIEK VKIQLETVEN EIDNTRLKAE 240
  241 EFERKYEGEM ILRRESEIAL EKEKKELEEV KLKLETYERE QENLSSEVRT WQDKYEQESS 300
  301 LRKLSEYALS REQEELQIVK GLLEFYNGEA DAMREERDKA LKTAKEQMEK RQPPSSFFCP 360
  361 ITQASPNLYK KMITCITLNL EVMKDPHFAA DGFTYEAESI RKWLSTGHQT SPMTNLRLSH 420
  421 LTLVPNRALR SAIEELV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..321] PSI-BLAST 25.69897 Heavy meromyosin subfragment
    2 View Details [322..437] PSI-BLAST 4.0 Crystal structure of the CHIP U-box E3 ubiquitin ligase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.0938889867773109 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle