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Protein Overview: gi|15222077

General Information:
Name(s) found: gi|15222077 [NCBI NR]
Description(s) found:
Found 7 descriptions.
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  • gi|15222077|ref|NP_175351.1| ATP dependent DNA ligase family protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 657 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: DNA repair [IEA]
    DNA replication [IEA]
    DNA recombination [IEA]
    Molecular Function: ATP binding [IEA][ISS]
    DNA binding [IEA]
    DNA ligase (ATP) activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNASAKKKR KLEETVDTPP TRVDDKTLVL ISDSKKPKSD RVTKLKSKIG LLKKKPTESG  60
   61 RIVITHILCN MLRTVIATTP DDLLPTVYLA ANEIAPAHEG IKLGMGKGSY IIKAISEAFG 120
  121 RTESHVEQQY TQLGDLGLVA NGSRSSQTMI FMPKPLTVVK VADTLRLIAK ESGKGSKDKK 180
  181 KDLMKALLVA TTDCEPLYLT RLLQDNLRLG FSRQTVLAAL GQAAVYNEEH SKPPPNIKNP 240
  241 LDEAATIVKE VFSMLPVYDI IVGALLTSGV WNLPKTCNLT LGVPVRPMLA KATTRVDLIL 300
  301 EKFKDTVFTA EYKYDGERAQ IYYMEDGTVE IFSRHAERNT GKYPDVALVL SRLKKPTVKS 360
  361 FILDCEVVTF NREKEKILPL QSTRAHKNVN VSDIKVGVCV FAFDILYLNG QLLIHENLNI 420
  421 RREKLHDSFE EDLGYFQFAT ALTSNDIGEL QEFLKASIDI GCEGLMIKSL YSNATYEPAK 480
  481 RSNNWLKLKK DYMDNIGDSV DLVPIATFHG RGKRTGFFGA YLLACYDVDK EEFQSICKIG 540
  541 TEFSDVELQD LSSSLCSKVI ATPKQYYQVD NDLNPDVWLE PTEVWEVKAA DLTVSPVYRE 600
  601 AIGIVDPDKG ISLRFPRLVR IRKDKNPEEA TTSDQIAEMY QAQKHNQPSN QGKVDDD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..657] PSI-BLAST 177.0 Crystal Structure of Human DNA Ligase I bound to 5'-adenylated, nicked DNA


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle