YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|222424128, gi...

General Information:
Name(s) found: gi|42571667 [NCBI NR]
gi|222424128 [NCBI NR]
gi|194272240 [NCBI NR]
Description(s) found:
SHOW ONLY BEST
  • gi|42571667|ref|NP_973924.1| polynucleotide adenylyltransferase family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|222424128|dbj|BAH20023.1| AT1G28090 [Arabidopsis thaliana] [NCBI NR]
  • gi|194272240|gb|ACF37205.1| At1g28090 [Arabidopsis thaliana] [NCBI NR]
  • polynucleotide adenylyltransferase family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Polynucleotide adenylyltransferase family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | polynucleotide adenylyltransferase family protein | chr1:9796032-9798878 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • RNA binding / nucleotidyltransferase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Polynucleotide adenylyltransferase family protein | chr1:9796045-9798891 FORWARD LENGTH=505 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • AT1G28090 protein OS=Arabidopsis thaliana GN=AT1G28090 PE=2 SV=1 [ARATH-contam.fasta]
  • Isoform of F4HUW0, AT1G28090 protein OS=Arabidopsis thaliana GN=At1g28090 PE=2 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 505 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: RNA processing [IEA]
    Molecular Function: nucleotidyltransferase activity [IEA]
    RNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIVQIGHCG CVGAIAAPRN VVKPRKEESR DFSGARGSNK DKSMPWKKLD ANEFGIQRSM  60
   61 IPDSTRMVLN KLKKKGFQVY LVGGCVRDLI LDRIPKDFDV ITTAELKEVR KVFPGCQIVG 120
  121 RRFPICHVYV DDIIIEVSSF STSARTGKAP NKSFRRPAGC DERDYIRWKN CLQRDFTVNG 180
  181 LMFDPSENVV YDYIGGVEDL RNSKVRTVSA ANLSFVEDTA RILRAIRIAA RLGFSLTKDV 240
  241 AISVKELSSS LLRLDPSRIR MEINYMLAYG SAEASLRLLW RFGLMEILLP IQASYLVSQG 300
  301 FRRRDGRSNM LLSLFRNLDR LVAPDRPCSE FLWIGILAFH KALVDQPRDP TVVASFCLAI 360
  361 YSEVSLSEAI AIARSNSKQH NSHFQELSSP EKDTADSESK ISQQVIKLAE SIRSAARKLN 420
  421 NRDYIANAMS KYPQAPGSDM VFLSRLMLER VEKMFGNVRR KGNQERDDVP SLERRINYKS 480
  481 LALGDFHETR RVFARIVFDT IYPLA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..505] PSI-BLAST 63.69897 tRNA CCA-adding enzyme, C-terminal domains; tRNA CCA-adding enzyme, head domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.222270543382941 bayes_pls_golite062009
  • transferase activity
    		•  0.00393984128503999 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.85

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle