YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|222424128, gi...
Organism: Arabidopsis thaliana
Length: 505 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|222424128, gi....

Description E-value Query
Range
Subject
Range
gi|42562367 - gi|42562367|ref|NP_174130.2| polynucleotide adenylyltransferase family protein [Arabidopsis thaliana...
442.0 [0..5] [505..41]

Back

Predicted Domain #1
Region A:
Residues: [1-505]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIVQIGHCG CVGAIAAPRN VVKPRKEESR DFSGARGSNK DKSMPWKKLD ANEFGIQRSM  60
   61 IPDSTRMVLN KLKKKGFQVY LVGGCVRDLI LDRIPKDFDV ITTAELKEVR KVFPGCQIVG 120
  121 RRFPICHVYV DDIIIEVSSF STSARTGKAP NKSFRRPAGC DERDYIRWKN CLQRDFTVNG 180
  181 LMFDPSENVV YDYIGGVEDL RNSKVRTVSA ANLSFVEDTA RILRAIRIAA RLGFSLTKDV 240
  241 AISVKELSSS LLRLDPSRIR MEINYMLAYG SAEASLRLLW RFGLMEILLP IQASYLVSQG 300
  301 FRRRDGRSNM LLSLFRNLDR LVAPDRPCSE FLWIGILAFH KALVDQPRDP TVVASFCLAI 360
  361 YSEVSLSEAI AIARSNSKQH NSHFQELSSP EKDTADSESK ISQQVIKLAE SIRSAARKLN 420
  421 NRDYIANAMS KYPQAPGSDM VFLSRLMLER VEKMFGNVRR KGNQERDDVP SLERRINYKS 480
  481 LALGDFHETR RVFARIVFDT IYPLA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 63.69897
Match: 1mivA
Description: tRNA CCA-adding enzyme, C-terminal domains; tRNA CCA-adding enzyme, head domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.222270543382941 bayes_pls_golite062009
transferase activity 0.00393984128503999 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle