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Protein Overview: PUB55_ARATH

General Information:
Name(s) found: PUB55_ARATH [Swiss-Prot]
Description(s) found:
Found 7 descriptions.
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  • Putative U-box domain-containing protein 55 OS=Arabidopsis thaliana GN=PUB55 PE=3 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 568 amino acids

    Gene Ontology:
    Cellular Component: ubiquitin ligase complex [IEA]
    Biological Process: protein ubiquitination [IEA]
    Molecular Function: ubiquitin-protein ligase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAELMAMGND VVHVAVKSDV RESRSTLLWA LRNLGAKKVC ILHVYQPKTA SPAARKLEEL  60
   61 EAIMYETLHD YFDFCQQEGV NEDDIYISCI EMNDVKQGIL ELIHESKIKK LVMGAASDHH 120
  121 YSEKMFDLKS RKAKYVYQHA PSSCEVMFMC DGHLIYTKEA NLEDCMGETE SEAGQSKPKL 180
  181 YSSASPKCSA ELVSAIVAYI DTRRDRDMLE PNASEDQSES DRNDQLYRQL KQALMEVEES 240
  241 KREAYEECVR RFKAENTAVE AIRSAREYEA MYNEEAKLRK EGKEALAKQR KMVEKTKQER 300
  301 DDALIIILNG RKLYNEELRR RVEAEEMLGK EKEEHERTKK EIEEVRAIVQ DGTLYNEQLR 360
  361 HRKEMEESMK RQEEELEKTK KEKEEACMIS KNLMQLYEDE VRQRKEAEEL VKRRREELEK 420
  421 VKKEKEEACS VGQNFMRLYE EEARRRKGTE EELSKVAAEK DAASSVCSEI LLLLQSYTRR 480
  481 HGTPSGFSDE DSVTRQPPSY FICPISQEVM REPRVAADGF TYEAESLREW LDNGHETSPM 540
  541 TNLKLAHNNL VPNHALRSAI QEWLQRNS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..351] PSI-BLAST 19.39794 Heavy meromyosin subfragment
    2 View Details [352..495] PSI-BLAST 12.045757 Tropomyosin
    3 View Details [496..568] PSI-BLAST 17.39794 NMR solution structure of the U box domain from AtPUB14, an armadillo repeat containing protein from Arabidopsis thaliana

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  0.0938889867773109 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle