| Protein: | PUB55_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 568 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUB55_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
223.0 | [0..10] | [539..2053] |
|
Region A: Residues: [1-351] |
1 11 21 31 41 51
| | | | | |
1 MAELMAMGND VVHVAVKSDV RESRSTLLWA LRNLGAKKVC ILHVYQPKTA SPAARKLEEL 60
61 EAIMYETLHD YFDFCQQEGV NEDDIYISCI EMNDVKQGIL ELIHESKIKK LVMGAASDHH 120
121 YSEKMFDLKS RKAKYVYQHA PSSCEVMFMC DGHLIYTKEA NLEDCMGETE SEAGQSKPKL 180
181 YSSASPKCSA ELVSAIVAYI DTRRDRDMLE PNASEDQSES DRNDQLYRQL KQALMEVEES 240
241 KREAYEECVR RFKAENTAVE AIRSAREYEA MYNEEAKLRK EGKEALAKQR KMVEKTKQER 300
301 DDALIIILNG RKLYNEELRR RVEAEEMLGK EKEEHERTKK EIEEVRAIVQ D
|
| Detection Method: |  |
| Confidence: | 19.39794 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [352-495] |
1 11 21 31 41 51
| | | | | |
1 GTLYNEQLRH RKEMEESMKR QEEELEKTKK EKEEACMISK NLMQLYEDEV RQRKEAEELV 60
61 KRRREELEKV KKEKEEACSV GQNFMRLYEE EARRRKGTEE ELSKVAAEKD AASSVCSEIL 120
121 LLLQSYTRRH GTPSGFSDED SVTR
|
| Detection Method: | |
| Confidence: | 12.045757 |
| Match: | 2tmaA |
| Description: | Tropomyosin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [496-568] |
1 11 21 31 41 51
| | | | | |
1 QPPSYFICPI SQEVMREPRV AADGFTYEAE SLREWLDNGH ETSPMTNLKL AHNNLVPNHA 60
61 LRSAIQEWLQ RNS
|
| Detection Method: | |
| Confidence: | 17.39794 |
| Match: | 1t1hA |
| Description: | NMR solution structure of the U box domain from AtPUB14, an armadillo repeat containing protein from Arabidopsis thaliana |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.0938889867773109 | bayes_pls_golite062009 |
