YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: PUB6_ARATH

General Information:
Name(s) found: PUB6_ARATH [Swiss-Prot]
Description(s) found:
Found 8 descriptions.
SHOW ALL
  • U-box domain-containing protein 6 OS=Arabidopsis thaliana GN=PUB6 PE=2 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 771 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    Biological Process: protein ubiquitination [IEA]
    Molecular Function: ubiquitin-protein ligase activity [IEA]
    binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVSELEENL FAASDAKLHG DMCKELSAVY CKVLSIFPSL EEARPRSKSG IQTLCSLHIA  60
   61 LEKAKNILQH CSECSKLYLA ITGDAVLLKF EKAKSALIDS LRRVEDIVPS SIGSQILDIV 120
  121 GELEHTKFLL DPSEKEVGDR IIALLQQGKK FDNGSDSTEL EIFHQAATRL SITSSRSALA 180
  181 ERRALKKVID RARVEEDKRK ESIVAYLLHL MRKYSKLFRS EMMDENDSPC STPCSPTGQG 240
  241 PNEDRVNAFG RQLSKFGSIN YKPMNSRKSG QMPIPPEELR CPISLQLMYD PVIIASGQTY 300
  301 ERVCIEKWFS DGHNSCPKTQ QQLPHLSLTP NYCVKGLIAS WCEQNGITVP TGPPESLDLN 360
  361 YWRLAMSDSE SPNSKSVDSV GLCTPKDIRV VPLEESSTIE SERQQKEKNN APDEVDSEIN 420
  421 VLEGYQDILA IVDKEEDLAK KCKVVENVRI LLKDNEEARI LMGANGFVEA FLQFLESAVH 480
  481 DNNAAAQETG AMALFNLAVN NNRNKELMLT SGVIPLLEKM ISCSQSQGPA TALYLNLSCL 540
  541 EKAKPVIGSS QAVSFFVNLL LQDTKTQCKL DALHALYNLS TYSPNIPTLL SSNIIKSLQV 600
  601 LASTGNHLWI EKSLAVLLNL ASSREGKEEM ITTQGMISTL ATVLDTGDTV EQEQAVSCLV 660
  661 ILCTGSESCI QMVLQEGVIP SLVSISVNGS PRGRDKSQKL LMLFREQRHR DQPSPNKEEA 720
  721 PRKTVSAPMA IPAPVSAPES EVKPLTKSIS RRKTMTRPFS FLWKKSHSIH H

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..258] PSI-BLAST 20.0 No description for 2qizA was found.
    2 View Details [259..346] PSI-BLAST 10.045757 NMR solution structure of the U box domain from AtPUB14, an armadillo repeat containing protein from Arabidopsis thaliana
    3 View Details [347..511] FFAS03 2.05 No description for 2gl7A was found.
    4 View Details [512..706] PSI-BLAST 9.39794 No description for 2iaeA was found.
    5 View Details [707..771] PSI-BLAST 54.30103 Crystal structure of the exportin Cse1p complexed with its cargo ( Kap60p) and RanGTP

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.0938889867773109 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle