| Protein: | PUB6_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 771 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUB6_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
369.0 | [0..1] | [771..1] |
|
Region A: Residues: [1-258] |
1 11 21 31 41 51
| | | | | |
1 MDVSELEENL FAASDAKLHG DMCKELSAVY CKVLSIFPSL EEARPRSKSG IQTLCSLHIA 60
61 LEKAKNILQH CSECSKLYLA ITGDAVLLKF EKAKSALIDS LRRVEDIVPS SIGSQILDIV 120
121 GELEHTKFLL DPSEKEVGDR IIALLQQGKK FDNGSDSTEL EIFHQAATRL SITSSRSALA 180
181 ERRALKKVID RARVEEDKRK ESIVAYLLHL MRKYSKLFRS EMMDENDSPC STPCSPTGQG 240
241 PNEDRVNAFG RQLSKFGS
|
| Detection Method: |  |
| Confidence: | 20.0 |
| Match: | 2qizA |
| Description: | No description for 2qizA was found. |
|
Region A: Residues: [259-346] |
1 11 21 31 41 51
| | | | | |
1 INYKPMNSRK SGQMPIPPEE LRCPISLQLM YDPVIIASGQ TYERVCIEKW FSDGHNSCPK 60
61 TQQQLPHLSL TPNYCVKGLI ASWCEQNG
|
| Detection Method: | |
| Confidence: | 10.045757 |
| Match: | 1t1hA |
| Description: | NMR solution structure of the U box domain from AtPUB14, an armadillo repeat containing protein from Arabidopsis thaliana |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.0938889867773109 | bayes_pls_golite062009 |
|
Region A: Residues: [347-511] |
1 11 21 31 41 51
| | | | | |
1 ITVPTGPPES LDLNYWRLAM SDSESPNSKS VDSVGLCTPK DIRVVPLEES STIESERQQK 60
61 EKNNAPDEVD SEINVLEGYQ DILAIVDKEE DLAKKCKVVE NVRILLKDNE EARILMGANG 120
121 FVEAFLQFLE SAVHDNNAAA QETGAMALFN LAVNNNRNKE LMLTS
|
| Detection Method: | |
| Confidence: | 2.05 |
| Match: | 2gl7A |
| Description: | No description for 2gl7A was found. |
|
Region A: Residues: [512-706] |
1 11 21 31 41 51
| | | | | |
1 GVIPLLEKMI SCSQSQGPAT ALYLNLSCLE KAKPVIGSSQ AVSFFVNLLL QDTKTQCKLD 60
61 ALHALYNLST YSPNIPTLLS SNIIKSLQVL ASTGNHLWIE KSLAVLLNLA SSREGKEEMI 120
121 TTQGMISTLA TVLDTGDTVE QEQAVSCLVI LCTGSESCIQ MVLQEGVIPS LVSISVNGSP 180
181 RGRDKSQKLL MLFRE
|
| Detection Method: | |
| Confidence: | 9.39794 |
| Match: | 2iaeA |
| Description: | No description for 2iaeA was found. |
|
Region A: Residues: [707-771] |
1 11 21 31 41 51
| | | | | |
1 QRHRDQPSPN KEEAPRKTVS APMAIPAPVS APESEVKPLT KSISRRKTMT RPFSFLWKKS 60
61 HSIHH
|
| Detection Method: | |
| Confidence: | 54.30103 |
| Match: | 1wa5B |
| Description: | Crystal structure of the exportin Cse1p complexed with its cargo ( Kap60p) and RanGTP |
Matching Structure (courtesy of the PDB): |
|
