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Protein Overview: gi|15220039, gi|...

General Information:
Name(s) found: gi|15220039 [NCBI NR]
gi|119360041 [NCBI NR]
Description(s) found:
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  • gi|15220039|ref|NP_173159.1| pfkB-type carbohydrate kinase family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|119360041|gb|ABL66749.1| At1g17160 [Arabidopsis thaliana] [NCBI NR]
  • pfkB-type carbohydrate kinase family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 PfkB-type carbohydrate kinase family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | pfkB-type carbohydrate kinase family protein | chr1:5867671-5869208 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • kinase/ ribokinase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | pfkB-like carbohydrate kinase family protein | chr1:5867678-5869215 FORWARD LENGTH=379 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At1g17160 OS=Arabidopsis thaliana GN=At1g17160 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 379 amino acids

    Gene Ontology:
    Cellular Component: chloroplast stroma [IDA]
    chloroplast [IDA]
    Biological Process: D-ribose metabolic process [IEA]
    Molecular Function: ribokinase activity [IEA]
    kinase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKGISSVSQ SINYNPYIEF NRPQLQISTV NPNPAQSRFS RPRSLRVLSL SADPSANRNP  60
   61 KSAVDAHAPP LVVVGSANAD IYVEIERLPK EGETISAKTG QTLAGGKGAN QAACGAKLMY 120
  121 PTYFVGRLGE DAHGKLIAEA LGDDGCGVHL DYVRSVNNEP TGHAVVMLQS DGQNSIIIVG 180
  181 GANMKAWPEI MSDDDLEIVR NAGIVLLQRE IPDSINIQVA KAVKKAGVPV ILDVGGMDTP 240
  241 IPNELLDSID ILSPNETELS RLTGMPTETF EQISQAVAKC HKLGVKQVLV KLGSKGSALF 300
  301 IQGEKPIQQS IIPAAQVVDT TGAGDTFTAA FAVAMVEGKS HEECLRFAAA AASLCVQVKG 360
  361 AIPSMPDRKS VLKLLKFSI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..379] PSI-BLAST 60.154902 Crystal structure of Ribokinase (TM0960) from Thermotoga maritima at 2.15 A resolution

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ribokinase activity
    		•  4.13972810632318 bayes_pls_golite062009
  • carbohydrate kinase activity
    		•  3.53872211951287 bayes_pls_golite062009
  • kinase activity
    		•  2.44230326483029 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  2.43969902311075 bayes_pls_golite062009
  • transferase activity
    		•  2.15883296431019 bayes_pls_golite062009
  • phosphofructokinase activity
    		•  1.98381934960918 bayes_pls_golite062009
  • catalytic activity
    		•  1.74474587246986 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  1.01768986812996 bayes_pls_golite062009
  • binding
    		•  0.750579388499649 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.43271347210671 bayes_pls_golite062009
  • DNA binding
    		•  0.0886731070705062 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.0561488099067549 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle