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Protein Overview: gi|42568692, gi|...

General Information:
Name(s) found: gi|42568692 [NCBI NR]
gi|119935943 [NCBI NR]
Description(s) found:
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  • gi|42568692|ref|NP_200959.2| NADP-dependent oxidoreductase, putative [Arabidopsis thaliana] [NCBI NR]
  • gi|119935943|gb|ABM06041.1| At5g61510 [Arabidopsis thaliana] [NCBI NR]
  • NADP-dependent oxidoreductase, putative [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 NADP-dependent oxidoreductase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | NADP-dependent oxidoreductase, putative | chr5:24754310-24756201 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • oxidoreductase/ zinc ion binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | GroES-like zinc-binding alcohol dehydrogenase family protein | chr5:24737084-24738975 REVERSE LENGTH=406 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At5g61510 OS=Arabidopsis thaliana GN=At5g61510 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 406 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: cell differentiation [IEP]
    response to high light intensity [IEP]
    Molecular Function: zinc ion binding [IEA]
    oxidoreductase activity [IEA]
    catalytic activity [IEA]
    binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALTLHHHH HHRHHSCLQA SGHLSRRLYH RIFSSFPRNP VKDLNFRLSL ADFSSFSLST  60
   61 RGTVFAVRAL STVAVEESSE KKMVKGIRVY EHGGPEVLKW EDVEVGEPKE GEIRVKNKAI 120
  121 GLNFIDVYFR KGVYKPASMP FTPGMEAVGE VVAVGSGLTG RMIGDLVAYA GNPMGAYAEE 180
  181 QILPADKVVP VPSSIDPIVA ASIMLKGMTA QFLLRRCFKV EPGHTILVHA AAGGVGSLLC 240
  241 QWANALGATV IGTVSTNEKA AQAKEDGCHH VIMYKNEDFV SRVNDITSGK GVNVVYDSVG 300
  301 KDTFKGSLAC LKSRGYMVSF GQSSGSPDPI PLSDLAPKSL FLTRPSMMHY NETRDELLEC 360
  361 AGEVFANVTS GILKARVNHK YPLSRVADAH ADLENRITSG SVVLLP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..82] MSA 1.361996 View MSA. No confident structure predictions are available.
    2 View Details [83..406] PSI-BLAST 76.39794 Quinone oxidoreductase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • alcohol dehydrogenase (NAD) activity
    		•  2.94416173750168 bayes_pls_golite062009
  • alcohol dehydrogenase activity, zinc-dependent
    		•  2.26153457113968 bayes_pls_golite062009
  • oxidoreductase activity
    		•  1.98266850665386 bayes_pls_golite062009
  • catalytic activity
    		•  1.79741889688267 bayes_pls_golite062009
  • retinol dehydrogenase activity
    		•  1.04497968922284 bayes_pls_golite062009
  • oxidoreductase activity, acting on CH-OH group of donors
    		•  1.03956654822048 bayes_pls_golite062009
  • binding
    		•  0.982999356179965 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.980245559401213 bayes_pls_golite062009
  • DNA binding
    		•  0.940078857029005 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
    		•  0.93258555725042 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.854100257756792 bayes_pls_golite062009
  • RNA binding
    		•  0.843556706364142 bayes_pls_golite062009
  • chaperone binding
    		•  0.593082758130032 bayes_pls_golite062009
  • protein binding
    		•  0.507836099271263 bayes_pls_golite062009
  • coenzyme binding
    		•  0.46570602169425 bayes_pls_golite062009
  • NAD or NADH binding
    		•  0.46286018152257 bayes_pls_golite062009
  • transcription factor activity
    		•  0.35056694435192 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.87

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle