YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|15240985

General Information:
Name(s) found: gi|15240985 [NCBI NR]
Description(s) found:
Found 7 descriptions.
SHOW ALL
  • gi|15240985|ref|NP_198109.1| WD-40 repeat family protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 411 amino acids

    Gene Ontology:
    Cellular Component: heterotrimeric G-protein complex [ISS]
    CUL4 RING ubiquitin ligase complex [ISS]
    Biological Process: signal transduction [ISS]
    Molecular Function: signal transducer activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFDFANYAL TQGRKRNVDE VTSASRKAYM TQLAEAMNQN RTRILAFRNK PKALLSSNHS  60
   61 DPPHQQPISV KPRRYIPQNS ERVLDAPGIA DDFYLNLLDW GSSNVLAIAL GDTVYLWDAS 120
  121 SGSTYKLVTI DEEEGPVTSI NWTQDGLDLA IGLDNSEVQL WDCVSNRQVR TLRGGHESRV 180
  181 GSLAWNNHIL TTGGMDGKIV NNDVRIRSSI VETYLGHTEE VCGLKWSESG KKLASGGNDN 240
  241 VVHIWDHRSV ASSNPTRQWL HRFEEHTAAV RALAWCPFQA SLLATGGGVG DGKIKFWNTH 300
  301 TGACLNSVET GSQVCSLLWS KSERELLSSH GFTQNQLTLW KYPSMVKMAE LNGHTSRVLF 360
  361 MAQSPDGCTV ASAAGDETLR LWNVFGEPPK TTKKAASKKY TDPFAHVNHI R

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..60] PSI-BLAST 26.09691 Crystal Structure of Murine Coronin-1
    2 View Details [61..411] PSI-BLAST 69.221849 PAF-AH Holoenzyme: Lis1/Alfa2

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • histone methyltransferase activity (H3-K4 specific)
    		•  4.71992275913384 bayes_pls_golite062009
  • S-adenosylmethionine-dependent methyltransferase activity
    		•  3.25521258308263 bayes_pls_golite062009
  • binding
    		•  2.2778252170547 bayes_pls_golite062009
  • histone methyltransferase activity
    		•  1.85632145559025 bayes_pls_golite062009
  • protein binding
    		•  1.42618832381942 bayes_pls_golite062009
  • protein methyltransferase activity
    		•  1.35170368882651 bayes_pls_golite062009
  • lysine N-methyltransferase activity
    		•  1.15313682561559 bayes_pls_golite062009
  • protein-lysine N-methyltransferase activity
    		•  1.15313682561559 bayes_pls_golite062009
  • histone-lysine N-methyltransferase activity
    		•  1.15313682561559 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.693814013902061 bayes_pls_golite062009
  • histone binding
    		•  0.685319917508843 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.359536347486199 bayes_pls_golite062009
  • protein kinase activity
    		•  0.229242350006544 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.190100099674138 bayes_pls_golite062009
  • chromatin binding
    		•  0.145491963066342 bayes_pls_golite062009
    		• 0.0248988265652406 bayes_pls_golite062009
  • N-methyltransferase activity
    		•  0.00335766408304172 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle