YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|15240482

General Information:
Name(s) found: gi|15240482 [NCBI NR]
Description(s) found:
SHOW ONLY BEST
  • gi|15240482|ref|NP_198083.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G27780.1); similar to hypothetical protein 27.t00084 [Brassica oleracea] (GB:ABD65078.1); contains InterPro domain Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G27780.1); similar to hypothetical protein 27.t00084 [Brassica oleracea] (GB:ABD65078.1); contains InterPro domain Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type; (InterPro:IPR003617) | chr5:9625452-9626564 FORWARD [TAIR_A_Thaliana_na_04-12-2008_reversed.fasta]
  • | Symbols: | Transcription factor IIS family protein | chr5:9625449-9626561 FORWARD LENGTH=370 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Transcription factor IIS family protein OS=Arabidopsis thaliana GN=At5g27310 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 370 amino acids

    Gene Ontology:
    Cellular Component: plasma membrane [IDA]
    Biological Process: transcription [IEA]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKNDGKMMR VRIAKERSDL CDLTAAAIKA TYNTRNPCEV ERCIDVLNHL KSLSLSVKDI  60
   61 ELSESIVKLE TLRSHRNPRI RKEAQALFHS WLKTFYAHGS DNSFKAALTK DRLKMKKHVL 120
  121 TRCSELKKED EPGTIACQVT AFTLLKNKED ERFQTTVEAV ESKTTIKLSE LNKKEDQRSL 180
  181 TRETEMIKAR NSFLALKQKE DHKSETCDEK YFKKETKTNL KPLNMKTRCV SLEDVTTKKP 240
  241 HEDGSLIKKT KTEKELKNKK VDEMVKLFEA AKKAADVANA KGVLSGKPEA SRCINALSLL 300
  301 MKINITPKPK EPRSMMDKLE GLTKHKDRKI CHVASALLHL WRQRIREQER KKSVTKASSK 360
  361 NIQRRGNLVM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..161] MSA 1.007956 View MSA. No confident structure predictions are available.
    2 View Details [162..259] deduced N/A Confident ab initio structure predictions are available.
    3 View Details [260..370] FFAS03 1.25 Solution structure of the N-terminal Domain I of mouse transcription elongation factor S-II protein 3


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle