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Protein Overview: gi|15239455

General Information:
Name(s) found: gi|15239455 [NCBI NR]
Description(s) found:
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  • gi|15239455|ref|NP_197935.1| DNAJ heat shock protein, putative [Arabidopsis thaliana] [NCBI NR]
  • DNAJ heat shock protein, putative [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 DNAJ heat shock protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | DNAJ heat shock protein, putative | chr5:8889668-8890957 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • heat shock protein binding / unfolded protein binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | DNAJ heat shock family protein | chr5:8889665-8890954 REVERSE LENGTH=347 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Putative DNAJ heat shock protein OS=Arabidopsis thaliana GN=At5g25530 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 347 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: protein folding [IEA][ISS]
    Molecular Function: heat shock protein binding [IEA]
    unfolded protein binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLDYYDILK VNRNATEDDL KKSYRKLAMK WHPDKNPNTK TEAEAKFKQI SEAYEAKYEV  60
   61 MFQVLSDPQK RAVYDQYGEE GLSDMPPPGS TGNNGRAGGF NPRNAEDIFA EFFGSSPFGF 120
  121 GSAGGPGRSM RFQSDGGGGM FGGFGGGNNG SENNIFRTYS EGTPAPKKPP PVESKLPCSL 180
  181 EELYSGSTRK MKISRSIVDA NGRQAQETEI LTIVVKPGWK KGTKIKFPDK GNEQVNQLPA 240
  241 DLVFVIDEKP HDLFTRDGND LITSRRVTLA EAIGGTTVNI NTLDGRNLPV GVAEIVSPGY 300
  301 EFVVPGEGMP IAKEPRNKGD LKIKFDVQFP ARLTTEQKSA LKRVLAG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..113] PSI-BLAST 21.0 J-DOMAIN (RESIDUES 1-77) OF THE ESCHERICHIA COLI N-TERMINAL FRAGMENT (RESIDUES 1-104) OF THE MOLECULAR CHAPERONE DNAJ, NMR, 20 STRUCTURES
    2 View Details [114..199] PSI-BLAST 5.30103 Solution structure of zinc finger domain from human DnaJ subfamily A menber 3
    3 View Details [200..347] PSI-BLAST 36.221849 No description for 2q2gA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • unfolded protein binding
    		•  3.04403163860617 bayes_pls_golite062009
  • heat shock protein binding
    		•  2.17994194200939 bayes_pls_golite062009
  • binding
    		•  2.03854863870179 bayes_pls_golite062009
  • chaperone binding
    		•  1.61155546076854 bayes_pls_golite062009
  • protein binding
    		•  1.35701123337504 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.2131700498174 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.12971478797926 bayes_pls_golite062009
  • DNA binding
    		•  0.8788643398536 bayes_pls_golite062009
  • Hsp70 protein binding
    		•  0.541755903922701 bayes_pls_golite062009
  • catalytic activity
    		•  0.106988907594358 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle