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Protein Overview: SRC28_ARATH

General Information:
Name(s) found: SRC28_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|91806878|gb|ABE66166.1| 28 kDa SC35-like splicing factor [Arabidopsis thaliana] [NCBI NR]
  • gi|30687014|ref|NP_197382.3| SCL28; RNA binding / nucleic acid binding / nucleotide binding [Arabidopsis thaliana] [NCBI NR]
  • Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana GN=SCL28 PE=1 SV=1 [Swiss-Prot]
  • SC35-like splicing factor, 28 kD (SCL28) [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 SC35-like splicing factor, 28 kD (SCL28) [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: SCL28 | SCL28 (SC35-like splicing factor 28); RNA binding | chr5:6268927-6271160 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • SCL28; RNA binding / nucleic acid binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • 28 kDa SC35-like splicing factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: SCL28, At-SCL28 | SC35-like splicing factor 28 | chr5:6268925-6271158 REVERSE LENGTH=236 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • 28 kDa SC35-like splicing factor OS=Arabidopsis thaliana GN=SCL28 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 236 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    nuclear speck [IDA]
    Biological Process: nuclear mRNA splicing, via spliceosome [TAS]
    Molecular Function: nucleic acid binding [IEA]
    nucleotide binding [IEA]
    RNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARARSRSRS YSPRPRDRSP PRERKGYDDN RLRERPSSRD HESSGPSGLL IRNLPLDARP  60
   61 NDLRDSFERF GPLKDIYLPR NYYTGEPRGF GFVKYRYAED AAEAMKRMNH KVIGGREIAI 120
  121 VFAEENRKTP QEMRTTNGTS GRHGDYKRTS HRSPRRRYRS HSRSRSPPRR ESRHSKVRED 180
  181 DLYSPRRRSR SISRSPLPRN EREYKSRNCR SPREERVLTP IRSRCLSRSR SRSLSR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..236] PSI-BLAST 31.045757 HNRNP A1 (RBD1,2) FROM HOMO SAPIENS

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle