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Protein Overview: PUB48_ARATH

General Information:
Name(s) found: PUB48_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|15238790|ref|NP_197335.1| U-box domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|122214367|sp|Q3E9F5.1|PUB48_ARATH RecName: Full=U-box domain-containing protein 48; AltName: Full=Plant U-box protein 48 [NCBI NR]
  • U-box domain-containing protein 48 OS=Arabidopsis thaliana GN=PUB48 PE=2 SV=1 [Swiss-Prot]
  • U-box domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 U-box domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | U-box domain-containing protein | chr5:6070642-6072200 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • ubiquitin-protein ligase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | ARM repeat superfamily protein | chr5:6070640-6072198 REVERSE LENGTH=456 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 456 amino acids

    Gene Ontology:
    Cellular Component: ubiquitin ligase complex [IEA]
    Biological Process: protein ubiquitination [IEA]
    Molecular Function: ubiquitin-protein ligase activity [IEA]
    binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADSTADATE TNADTLTLRR ELKKVLTENL NDGGVKDRVE TVKSIDEAIR ILNRLKIVES  60
   61 KKRKRESDSS SVEVPKEFKC TLSKTIMIDP VIIFSGQTYE KRYITEWLNH DLTCPTAKQV 120
  121 LYRVCLTPNH LINELITRWC LANKYDRPAP KPSDIDYVTE LFTDGIESLL QRISSPSSSV 180
  181 ADQTEAAKEL ALQTEKFVNV RDFFIKELPD SITRLLTPLS VLGDEVDSNP ELQENIVTAL 240
  241 FNMSTFEKNK TVLAENHQVI PLLAKSMKQG SVVTRRNATL TLASLSDIDS NKIIIGNSVA 300
  301 LKALIDLIGE LDDLSATHDA LCAVIDLCCD ERENWKKAIS LGLAPAAIKN IKARRNLFES 360
  361 LAALALISPH ERVIQEVANL GVIYDLLSIL RKTSCMVTCE NAVVIVGNMY AKSRERSIKK 420
  421 ILAEEENQHK TFTKIATQGS VVAVMKAQGI LQCINY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..456] PSI-BLAST 48.154902 Crystal structure of the exportin Cse1p complexed with its cargo ( Kap60p) and RanGTP

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.373576425899935 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle