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Protein Overview: PUB47_ARATH

General Information:
Name(s) found: PUB47_ARATH [Swiss-Prot]
Description(s) found:
Found 8 descriptions.
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  • Putative U-box domain-containing protein 47 OS=Arabidopsis thaliana GN=PUB47 PE=3 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 445 amino acids

    Gene Ontology:
    Cellular Component: ubiquitin ligase complex [IEA]
    Biological Process: protein ubiquitination [IEA]
    Molecular Function: ubiquitin-protein ligase activity [IEA]
    binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADSTADEST NADTLWRELH KVLPEIWYDG GGKDHCEIDE AIRILTCLRK IESKNPESDI  60
   61 SPVEVPKEFI CTLSNKIMIE PMLIASGQTF EKSYILEWLK HERTCPRTKQ VLYHRFMIPN 120
  121 HLINEVIKEW CLIHNFDRPK TSDEVIDLFT GDLESLLQRI SSPSSVEDQT EAAKELALKA 180
  181 KRFSSVCVYF VAKIPDSITR LLTPLSISED SNPEFLENIV TALHIFSTSE KNKTLVAENP 240
  241 LVLPLLAKYM KQGTVLTRIH SAATVNSLSY TDSNKIIIGN SEVLKALIHV IEEGDSLATS 300
  301 EAFSALSNLC PVKEISEKAV SEGLIRAAIK KIKAGSNVSM LLSLLAFVST QNHQTTEEMD 360
  361 NLGLIYDLFS ILRNSNSLVN DENAVVIVYN ICKSYKALQN VVLREEKRDV VLEEENKHGT 420
  421 FTRLENQEAG RATSLAKRIL EWILR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..445] PSI-BLAST 55.69897 Crystal structure of the exportin Cse1p complexed with its cargo ( Kap60p) and RanGTP

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.373576425899935 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle