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Protein Overview: PUB3_ARATH

General Information:
Name(s) found: PUB3_ARATH [Swiss-Prot]
Description(s) found:
Found 8 descriptions.
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  • U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 760 amino acids

    Gene Ontology:
    Cellular Component: ubiquitin ligase complex [IEA]
    Biological Process: protein ubiquitination [IEA]
    Molecular Function: ubiquitin-protein ligase activity [IEA]
    binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPVPVRCLL NSISRYLHLV ACQTIRFNPI QTCIGNMVLL LKLLKPLLDE VVDCKIPSDD  60
   61 CLYKGCEDLD SVVNQAREFL EDWSPKLSKL FGVFQCEVLL GKVQTCSLEI SRILLQLSQS 120
  121 SPVTSSVQSV ERCVQETESF KQEGTLMELM ENALRNQKDD ITSLDNNHLE SIIQMLGLIS 180
  181 NQDLLKESIT VEKERIRSQA SKSEEDMEQT EQLIELVLCI REHMLKTEFL EVAKGISIPP 240
  241 YFRCPLSTEL MLDPVIVASG QTFDRTSIKK WLDNGLAVCP RTRQVLTHQE LIPNYTVKAM 300
  301 IASWLEANRI NLATNSCHQY DGGDASSMAN NMGSQDFNRT ESFRFSLRSS SLTSRSSLET 360
  361 GNGFEKLKIN VSASLCGESQ SKDLEIFELL SPGQSYTHSR SESVCSVVSS VDYVPSVTHE 420
  421 TESILGNHQS SSEMSPKKNL ESSNNVNHEH SAAKTYECSV HDLDDSGTMT TSHTIKLVED 480
  481 LKSGSNKVKT AAAAEIRHLT INSIENRVHI GRCGAITPLL SLLYSEEKLT QEHAVTALLN 540
  541 LSISELNKAM IVEVGAIEPL VHVLNTGNDR AKENSAASLF SLSVLQVNRE RIGQSNAAIQ 600
  601 ALVNLLGKGT FRGKKDAASA LFNLSITHDN KARIVQAKAV KYLVELLDPD LEMVDKAVAL 660
  661 LANLSAVGEG RQAIVREGGI PLLVETVDLG SQRGKENAAS VLLQLCLNSP KFCTLVLQEG 720
  721 AIPPLVALSQ SGTQRAKEKA QQLLSHFRNQ RDARMKKGRS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..234] MSA 5.177993 View MSA. No confident structure predictions are available.
    2 View Details [235..319] PSI-BLAST 11.69897 NMR solution structure of the U box domain from AtPUB14, an armadillo repeat containing protein from Arabidopsis thaliana
    3 View Details [320..388] deduced N/A No confident structure predictions are available.
    4 View Details [389..760] PSI-BLAST 51.522879 Importin alpha


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle