Protein: | PUB3_ARATH |
Organism: | Arabidopsis thaliana |
Length: | 760 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUB3_ARATH.
Description | E-value | Query Range |
Subject Range |
|
387.0 | [0..1] | [760..1] |
|
315.0 | [0..1] | [751..1] |
|
310.0 | [0..1] | [755..43] |
Region A: Residues: [1-234] |
1 11 21 31 41 51 | | | | | | 1 MDPVPVRCLL NSISRYLHLV ACQTIRFNPI QTCIGNMVLL LKLLKPLLDE VVDCKIPSDD 60 61 CLYKGCEDLD SVVNQAREFL EDWSPKLSKL FGVFQCEVLL GKVQTCSLEI SRILLQLSQS 120 121 SPVTSSVQSV ERCVQETESF KQEGTLMELM ENALRNQKDD ITSLDNNHLE SIIQMLGLIS 180 181 NQDLLKESIT VEKERIRSQA SKSEEDMEQT EQLIELVLCI REHMLKTEFL EVAK |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [235-319] |
1 11 21 31 41 51 | | | | | | 1 GISIPPYFRC PLSTELMLDP VIVASGQTFD RTSIKKWLDN GLAVCPRTRQ VLTHQELIPN 60 61 YTVKAMIASW LEANRINLAT NSCHQ |
Detection Method: | |
Confidence: | 11.69897 |
Match: | 1t1hA |
Description: | NMR solution structure of the U box domain from AtPUB14, an armadillo repeat containing protein from Arabidopsis thaliana |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [320-388] |
1 11 21 31 41 51 | | | | | | 1 YDGGDASSMA NNMGSQDFNR TESFRFSLRS SSLTSRSSLE TGNGFEKLKI NVSASLCGES 60 61 QSKDLEIFE |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [389-760] |
1 11 21 31 41 51 | | | | | | 1 LLSPGQSYTH SRSESVCSVV SSVDYVPSVT HETESILGNH QSSSEMSPKK NLESSNNVNH 60 61 EHSAAKTYEC SVHDLDDSGT MTTSHTIKLV EDLKSGSNKV KTAAAAEIRH LTINSIENRV 120 121 HIGRCGAITP LLSLLYSEEK LTQEHAVTAL LNLSISELNK AMIVEVGAIE PLVHVLNTGN 180 181 DRAKENSAAS LFSLSVLQVN RERIGQSNAA IQALVNLLGK GTFRGKKDAA SALFNLSITH 240 241 DNKARIVQAK AVKYLVELLD PDLEMVDKAV ALLANLSAVG EGRQAIVREG GIPLLVETVD 300 301 LGSQRGKENA ASVLLQLCLN SPKFCTLVLQ EGAIPPLVAL SQSGTQRAKE KAQQLLSHFR 360 361 NQRDARMKKG RS |
Detection Method: | |
Confidence: | 51.522879 |
Match: | 1ialA |
Description: | Importin alpha |
Matching Structure (courtesy of the PDB): |