| Protein: | PUB3_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 760 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUB3_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
387.0 | [0..1] | [760..1] |
|
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315.0 | [0..1] | [751..1] |
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310.0 | [0..1] | [755..43] |
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Region A: Residues: [1-234] |
1 11 21 31 41 51
| | | | | |
1 MDPVPVRCLL NSISRYLHLV ACQTIRFNPI QTCIGNMVLL LKLLKPLLDE VVDCKIPSDD 60
61 CLYKGCEDLD SVVNQAREFL EDWSPKLSKL FGVFQCEVLL GKVQTCSLEI SRILLQLSQS 120
121 SPVTSSVQSV ERCVQETESF KQEGTLMELM ENALRNQKDD ITSLDNNHLE SIIQMLGLIS 180
181 NQDLLKESIT VEKERIRSQA SKSEEDMEQT EQLIELVLCI REHMLKTEFL EVAK
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [235-319] |
1 11 21 31 41 51
| | | | | |
1 GISIPPYFRC PLSTELMLDP VIVASGQTFD RTSIKKWLDN GLAVCPRTRQ VLTHQELIPN 60
61 YTVKAMIASW LEANRINLAT NSCHQ
|
| Detection Method: | |
| Confidence: | 11.69897 |
| Match: | 1t1hA |
| Description: | NMR solution structure of the U box domain from AtPUB14, an armadillo repeat containing protein from Arabidopsis thaliana |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [320-388] |
1 11 21 31 41 51
| | | | | |
1 YDGGDASSMA NNMGSQDFNR TESFRFSLRS SSLTSRSSLE TGNGFEKLKI NVSASLCGES 60
61 QSKDLEIFE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.744 | d.204.1 | Ribosome binding protein Y (YfiA homologue) |
| View | Download | 0.637 | d.17.1 | Cystatin/monellin |
| View | Download | 0.584 | b.34.13 | Chromo domain-like |
| View | Download | 0.584 | d.9.2 | Description not found. |
| View | Download | 0.554 | d.17.1 | Cystatin/monellin |
| View | Download | 0.549 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.531 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.474 | a.65.1 | Annexin |
| View | Download | 0.469 | a.4.8 | Ribosomal protein S18 |
|
Region A: Residues: [389-760] |
1 11 21 31 41 51
| | | | | |
1 LLSPGQSYTH SRSESVCSVV SSVDYVPSVT HETESILGNH QSSSEMSPKK NLESSNNVNH 60
61 EHSAAKTYEC SVHDLDDSGT MTTSHTIKLV EDLKSGSNKV KTAAAAEIRH LTINSIENRV 120
121 HIGRCGAITP LLSLLYSEEK LTQEHAVTAL LNLSISELNK AMIVEVGAIE PLVHVLNTGN 180
181 DRAKENSAAS LFSLSVLQVN RERIGQSNAA IQALVNLLGK GTFRGKKDAA SALFNLSITH 240
241 DNKARIVQAK AVKYLVELLD PDLEMVDKAV ALLANLSAVG EGRQAIVREG GIPLLVETVD 300
301 LGSQRGKENA ASVLLQLCLN SPKFCTLVLQ EGAIPPLVAL SQSGTQRAKE KAQQLLSHFR 360
361 NQRDARMKKG RS
|
| Detection Method: | |
| Confidence: | 51.522879 |
| Match: | 1ialA |
| Description: | Importin alpha |
Matching Structure (courtesy of the PDB): |
|
